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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PHYHD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
234.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
74.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
69.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
60.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
59.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
57.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
52.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
51.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
50.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
49.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
49.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
44.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
43.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
43.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
42.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
42.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
41.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
39.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
37.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
36.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
35.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
35.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
34.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
34.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
32.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
32.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
31.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
30.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
29.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PHYHD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.8
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
79.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
58.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
55.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
50.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
48.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
45.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
45.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
43.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
39.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
38.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
38.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
38.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
34.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
32.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
31.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
27.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
698
Normal
1.1
448
Normal
1.1
482
Normal
1.1
1022
Normal
1.1
944
Normal
1.1
746
Normal
1.1
472
Normal
1.1
1046
Normal
1.0
926
Normal
1.0
824
Normal
1.0
882
Normal
1.0
436
Normal
1.0
516
Normal
1.0
862
Normal
1.0
723
Tumor
1.0
546
Normal
1.0
342
Normal
1.0
465
Tumor
1.0
742
Normal
1.0
186
Normal
0.9
922
Normal
0.9
878
Normal
0.9
1032
Normal
0.9
966
Normal
0.9
146
Normal
0.9
298
Normal
0.9
884
Normal
0.9
568
Normal
0.9
196
Normal
0.9
958
Normal
0.9
432
Normal
0.9
912
Normal
0.9
314
Normal
0.9
332
Normal
0.9
1042
Normal
0.9
982
Normal
0.9
518
Normal
0.9
956
Normal
0.9
864
Normal
0.8
952
Normal
0.8
664
Normal
0.8
738
Normal
0.8
412
Normal
0.8
714
Normal
0.8
1014
Normal
0.8
786
Normal
0.8
132
Normal
0.7
111
Normal
0.7
648
Normal
0.7
874
Normal
0.7
964
Normal
0.7
696
Normal
0.7
462
Normal
0.7
662
Normal
0.7
618
Normal
0.7
366
Normal
0.7
394
Normal
0.7
128
Normal
0.7
722
Normal
0.7
514
Normal
0.7
955
Tumor
0.7
636
Normal
0.7
424
Normal
0.6
422
Normal
0.6
666
Normal
0.6
554
Normal
0.6
416
Normal
0.6
452
Normal
0.6
868
Normal
0.6
918
Normal
0.6
866
Normal
0.6
924
Normal
0.6
818
Normal
0.6
356
Normal
0.6
852
Normal
0.6
162
Normal
0.6
916
Normal
0.6
954
Normal
0.6
466
Normal
0.6
756
Normal
0.6
858
Normal
0.6
528
Normal
0.6
214
Normal
0.6
388
Normal
0.6
114
Normal
0.5
744
Normal
0.5
358
Normal
0.5
1044
Normal
0.5
616
Normal
0.5
446
Normal
0.5
478
Normal
0.5
716
Normal
0.5
968
Normal
0.5
914
Normal
0.5
312
Normal
0.5
258
Normal
0.5
464
Normal
0.5
642
Normal
0.5
526
Normal
0.5
414
Normal
0.5
468
Normal
0.5
474
Normal
0.5
354
Normal
0.5
572
Normal
0.5
222
Normal
0.5
352
Normal
0.5
228
Normal
0.5
628
Normal
0.5
938
Normal
0.5
494
Normal
0.5
728
Normal
0.5
426
Normal
0.5
695
Tumor
0.5
778
Normal
0.5
376
Normal
0.5
978
Normal
0.5
386
Normal
0.5
534
Normal
0.5
148
Normal
0.5
488
Normal
0.4
984
Normal
0.4
456
Normal
0.4
392
Normal
0.4
484
Normal
0.4
212
Normal
0.4
981
Tumor
0.4
574
Normal
0.4
262
Normal
0.4
124
Normal
0.4
672
Normal
0.4
1016
Normal
0.4
686
Normal
0.4
278
Normal
0.4
1026
Normal
0.3
564
Normal
0.3
344
Normal
0.3
423
Tumor
0.3
232
Normal
0.3
1028
Normal
0.3
368
Normal
0.3
224
Normal
0.3
192
Normal
0.3
188
Normal
0.3
492
Normal
0.3
816
Normal
0.3
136
Normal
0.3
444
Normal
0.3
267
Tumor
0.3
498
Normal
0.3
396
Normal
0.3
538
Normal
0.3
172
Normal
0.2
362
Normal
0.2
617
Tumor
0.2
126
Normal
0.2
976
Normal
0.2
384
Normal
0.2
1041
Tumor
0.2
127
Tumor
0.2
138
Normal
0.2
284
Normal
0.2
365
Tumor
0.2
558
Normal
0.2
428
Normal
0.1
434
Normal
0.1
715
Tumor
0.1
268
Normal
0.1
536
Normal
0.1
286
Normal
0.1
328
Normal
0.1
218
Normal
0.0
477
Tumor
0.0
915
Tumor
0.0
364
Normal
0.0
272
Normal
0.0
195
Tumor
0.0
161
Tumor
0.0
524
Normal
0.0
113
Tumor
0.0
327
Tumor
-0.1
745
Tumor
-0.1
911
Tumor
-0.1
487
Tumor
-0.2
355
Tumor
-0.2
513
Tumor
-0.2
663
Tumor
-0.2
867
Tumor
-0.2
873
Tumor
-0.2
415
Tumor
-0.3
261
Tumor
-0.3
627
Tumor
-0.3
451
Tumor
-0.3
741
Tumor
-0.3
913
Tumor
-0.3
435
Tumor
-0.3
533
Tumor
-0.3
257
Tumor
-0.3
447
Tumor
-0.3
112
Tumor
-0.4
353
Tumor
-0.4
571
Tumor
-0.5
421
Tumor
-0.5
925
Tumor
-0.5
491
Tumor
-0.5
217
Tumor
-0.5
957
Tumor
-0.6
1013
Tumor
-0.6
1045
Tumor
-0.6
917
Tumor
-0.6
185
Tumor
-0.6
393
Tumor
-0.6
983
Tumor
-0.6
461
Tumor
-0.6
191
Tumor
-0.6
145
Tumor
-0.6
615
Tumor
-0.6
943
Tumor
-0.6
857
Tumor
-0.6
814
Normal
-0.6
341
Tumor
-0.7
142
Normal
-0.7
823
Tumor
-0.7
187
Tumor
-0.7
383
Tumor
-0.8
467
Tumor
-0.8
223
Tumor
-0.8
313
Tumor
-0.8
1015
Tumor
-0.8
721
Tumor
-0.8
737
Tumor
-0.8
665
Tumor
-0.8
883
Tumor
-0.8
357
Tumor
-0.8
427
Tumor
-0.9
227
Tumor
-0.9
815
Tumor
-0.9
563
Tumor
-0.9
813
Tumor
-0.9
881
Tumor
-0.9
525
Tumor
-0.9
137
Tumor
-1.0
445
Tumor
-1.0
977
Tumor
-1.0
411
Tumor
-1.0
311
Tumor
-1.0
125
Tumor
-1.0
213
Tumor
-1.0
463
Tumor
-1.0
963
Tumor
-1.0
443
Tumor
-1.0
567
Tumor
-1.0
375
Tumor
-1.1
697
Tumor
-1.1
147
Tumor
-1.1
481
Tumor
-1.1
517
Tumor
-1.1
647
Tumor
-1.1
231
Tumor
-1.1
277
Tumor
-1.2
391
Tumor
-1.2
361
Tumor
-1.2
535
Tumor
-1.2
221
Tumor
-1.2
431
Tumor
-1.2
851
Tumor
-1.2
951
Tumor
-1.2
367
Tumor
-1.3
395
Tumor
-1.3
433
Tumor
-1.3
923
Tumor
-1.3
785
Tumor
-1.3
455
Tumor
-1.3
297
Tumor
-1.3
965
Tumor
-1.3
171
Tumor
-1.3
141
Tumor
-1.3
557
Tumor
-1.4
363
Tumor
-1.4
877
Tumor
-1.4
937
Tumor
-1.4
385
Tumor
-1.4
343
Tumor
-1.4
387
Tumor
-1.4
755
Tumor
-1.4
975
Tumor
-1.5
271
Tumor
-1.5
671
Tumor
-1.5
283
Tumor
-1.5
817
Tumor
-1.5
641
Tumor
-1.5
727
Tumor
-1.5
135
Tumor
-1.6
545
Tumor
-1.6
713
Tumor
-1.6
123
Tumor
-1.6
331
Tumor
-1.6
515
Tumor
-1.6
863
Tumor
-1.6
1025
Tumor
-1.7
285
Tumor
-1.7
473
Tumor
-1.7
553
Tumor
-1.7
211
Tumor
-1.7
425
Tumor
-1.8
921
Tumor
-1.8
413
Tumor
-1.8
661
Tumor
-1.8
1031
Tumor
-1.8
527
Tumor
-1.9
777
Tumor
-1.9
573
Tumor
-1.9
1027
Tumor
-1.9
953
Tumor
-1.9
685
Tumor
-1.9
635
Tumor
-1.9
131
Tumor
-1.9
537
Tumor
-1.9
471
Tumor
-2.0
1021
Tumor
-2.0
523
Tumor
-2.0
497
Tumor
-2.0
483
Tumor
-2.0
1043
Tumor
-2.0
861
Tumor
-2.0
493
Tumor
-2.1
967
Tumor
-2.1
351
Tumor
-2.2
865
Tumor
-2.3
724
Normal
-2.4
743
Tumor
-2.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.