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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CKAP5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
58.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
54.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
53.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
47.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
46.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
42.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
41.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
41.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
39.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
39.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
38.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
38.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
35.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
30.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
28.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
27.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
26.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CKAP5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
0.9
965
Tumor
0.9
865
Tumor
0.8
1027
Tumor
0.8
351
Tumor
0.7
283
Tumor
0.7
425
Tumor
0.7
745
Tumor
0.6
171
Tumor
0.6
727
Tumor
0.6
257
Tumor
0.6
285
Tumor
0.6
313
Tumor
0.6
473
Tumor
0.6
211
Tumor
0.6
661
Tumor
0.5
385
Tumor
0.5
724
Normal
0.5
123
Tumor
0.5
815
Tumor
0.5
983
Tumor
0.5
665
Tumor
0.5
487
Tumor
0.5
1013
Tumor
0.5
1021
Tumor
0.5
937
Tumor
0.4
537
Tumor
0.4
127
Tumor
0.4
967
Tumor
0.4
147
Tumor
0.4
647
Tumor
0.4
523
Tumor
0.4
435
Tumor
0.4
125
Tumor
0.4
737
Tumor
0.4
517
Tumor
0.4
131
Tumor
0.3
331
Tumor
0.3
375
Tumor
0.3
491
Tumor
0.3
455
Tumor
0.3
1043
Tumor
0.3
957
Tumor
0.3
635
Tumor
0.3
277
Tumor
0.3
527
Tumor
0.3
981
Tumor
0.3
161
Tumor
0.3
977
Tumor
0.3
953
Tumor
0.3
671
Tumor
0.3
513
Tumor
0.3
471
Tumor
0.3
391
Tumor
0.3
923
Tumor
0.3
341
Tumor
0.3
921
Tumor
0.3
813
Tumor
0.3
943
Tumor
0.3
447
Tumor
0.3
851
Tumor
0.3
915
Tumor
0.2
443
Tumor
0.2
297
Tumor
0.2
213
Tumor
0.2
367
Tumor
0.2
925
Tumor
0.2
743
Tumor
0.2
271
Tumor
0.2
911
Tumor
0.2
413
Tumor
0.2
917
Tumor
0.2
1015
Tumor
0.2
861
Tumor
0.2
137
Tumor
0.2
741
Tumor
0.2
641
Tumor
0.2
431
Tumor
0.2
573
Tumor
0.2
881
Tumor
0.2
311
Tumor
0.2
427
Tumor
0.2
493
Tumor
0.2
557
Tumor
0.2
697
Tumor
0.2
1025
Tumor
0.2
545
Tumor
0.1
814
Normal
0.1
883
Tumor
0.1
217
Tumor
0.1
535
Tumor
0.1
387
Tumor
0.1
421
Tumor
0.1
411
Tumor
0.1
715
Tumor
0.1
477
Tumor
0.1
975
Tumor
0.1
1031
Tumor
0.1
383
Tumor
0.1
963
Tumor
0.1
755
Tumor
0.1
185
Tumor
0.1
817
Tumor
0.1
187
Tumor
0.1
515
Tumor
0.1
483
Tumor
0.1
395
Tumor
0.1
951
Tumor
0.1
451
Tumor
0.1
481
Tumor
0.1
141
Tumor
0.1
913
Tumor
0.1
461
Tumor
0.1
536
Normal
0.1
112
Tumor
0.1
221
Tumor
0.1
497
Tumor
0.1
343
Tumor
0.1
524
Normal
0.1
873
Tumor
0.0
567
Tumor
0.0
1041
Tumor
0.0
823
Tumor
0.0
433
Tumor
0.0
615
Tumor
0.0
227
Tumor
0.0
363
Tumor
0.0
877
Tumor
0.0
261
Tumor
0.0
355
Tumor
0.0
478
Normal
0.0
365
Tumor
0.0
361
Tumor
0.0
231
Tumor
0.0
327
Tumor
0.0
785
Tumor
0.0
525
Tumor
0.0
434
Normal
0.0
135
Tumor
0.0
223
Tumor
0.0
721
Tumor
0.0
444
Normal
0.0
627
Tumor
0.0
195
Tumor
0.0
498
Normal
0.0
1045
Tumor
0.0
966
Normal
0.0
415
Tumor
0.0
467
Tumor
0.0
492
Normal
0.0
192
Normal
0.0
695
Tumor
-0.1
955
Tumor
-0.1
777
Tumor
-0.1
867
Tumor
-0.1
563
Tumor
-0.1
224
Normal
-0.1
916
Normal
-0.1
518
Normal
-0.1
713
Tumor
-0.1
538
Normal
-0.1
113
Tumor
-0.1
954
Normal
-0.1
145
Tumor
-0.1
778
Normal
-0.1
553
Tumor
-0.1
958
Normal
-0.1
968
Normal
-0.1
976
Normal
-0.1
191
Tumor
-0.1
964
Normal
-0.1
1028
Normal
-0.1
526
Normal
-0.1
218
Normal
-0.1
474
Normal
-0.1
1022
Normal
-0.1
686
Normal
-0.1
448
Normal
-0.1
528
Normal
-0.1
546
Normal
-0.1
714
Normal
-0.1
982
Normal
-0.1
857
Tumor
-0.1
786
Normal
-0.1
1044
Normal
-0.1
384
Normal
-0.1
412
Normal
-0.1
1014
Normal
-0.1
744
Normal
-0.1
268
Normal
-0.1
284
Normal
-0.1
617
Tumor
-0.1
472
Normal
-0.1
852
Normal
-0.1
516
Normal
-0.1
228
Normal
-0.1
728
Normal
-0.1
494
Normal
-0.1
944
Normal
-0.1
554
Normal
-0.1
952
Normal
-0.1
956
Normal
-0.1
642
Normal
-0.1
984
Normal
-0.1
558
Normal
-0.1
188
Normal
-0.1
922
Normal
-0.1
484
Normal
-0.1
866
Normal
-0.2
124
Normal
-0.2
924
Normal
-0.2
1026
Normal
-0.2
468
Normal
-0.2
884
Normal
-0.2
978
Normal
-0.2
696
Normal
-0.2
456
Normal
-0.2
328
Normal
-0.2
212
Normal
-0.2
882
Normal
-0.2
738
Normal
-0.2
353
Tumor
-0.2
533
Tumor
-0.2
344
Normal
-0.2
672
Normal
-0.2
746
Normal
-0.2
286
Normal
-0.2
572
Normal
-0.2
723
Tumor
-0.2
534
Normal
-0.2
462
Normal
-0.2
1046
Normal
-0.2
126
Normal
-0.2
685
Tumor
-0.2
628
Normal
-0.2
298
Normal
-0.2
616
Normal
-0.2
698
Normal
-0.2
824
Normal
-0.2
818
Normal
-0.2
918
Normal
-0.2
488
Normal
-0.2
148
Normal
-0.2
564
Normal
-0.2
432
Normal
-0.2
663
Tumor
-0.2
912
Normal
-0.2
357
Tumor
-0.2
874
Normal
-0.2
1042
Normal
-0.2
392
Normal
-0.2
393
Tumor
-0.2
232
Normal
-0.2
352
Normal
-0.2
816
Normal
-0.2
482
Normal
-0.2
742
Normal
-0.2
864
Normal
-0.2
1032
Normal
-0.2
568
Normal
-0.2
386
Normal
-0.2
938
Normal
-0.2
111
Normal
-0.2
1016
Normal
-0.2
364
Normal
-0.2
138
Normal
-0.2
128
Normal
-0.2
214
Normal
-0.2
436
Normal
-0.2
716
Normal
-0.2
312
Normal
-0.2
722
Normal
-0.2
416
Normal
-0.2
914
Normal
-0.2
362
Normal
-0.2
574
Normal
-0.2
278
Normal
-0.2
423
Tumor
-0.2
262
Normal
-0.2
267
Tumor
-0.2
514
Normal
-0.2
878
Normal
-0.2
862
Normal
-0.2
356
Normal
-0.2
926
Normal
-0.2
858
Normal
-0.2
196
Normal
-0.2
466
Normal
-0.2
446
Normal
-0.2
756
Normal
-0.2
114
Normal
-0.2
636
Normal
-0.2
618
Normal
-0.2
142
Normal
-0.2
146
Normal
-0.2
445
Tumor
-0.2
272
Normal
-0.2
863
Tumor
-0.2
666
Normal
-0.3
376
Normal
-0.3
662
Normal
-0.3
465
Tumor
-0.3
132
Normal
-0.3
648
Normal
-0.3
162
Normal
-0.3
186
Normal
-0.3
314
Normal
-0.3
868
Normal
-0.3
342
Normal
-0.3
396
Normal
-0.3
332
Normal
-0.3
172
Normal
-0.3
464
Normal
-0.3
354
Normal
-0.3
422
Normal
-0.3
664
Normal
-0.3
366
Normal
-0.3
222
Normal
-0.3
368
Normal
-0.3
136
Normal
-0.3
426
Normal
-0.3
424
Normal
-0.3
428
Normal
-0.3
452
Normal
-0.3
358
Normal
-0.4
394
Normal
-0.4
388
Normal
-0.4
414
Normal
-0.4
258
Normal
-0.4
571
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
