We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCTN2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
156.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
123.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
122.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
112.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
103.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
100.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
93.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
92.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
92.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
84.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
84.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
83.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
81.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
79.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
78.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
75.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
72.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
70.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
70.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
69.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
68.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
68.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
68.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
67.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
67.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
66.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
66.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
66.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
65.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
65.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
64.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
63.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
63.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
61.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
59.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
59.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
59.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
59.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
58.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
58.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
58.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
58.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
57.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
57.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
56.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
56.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
56.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
55.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
55.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
55.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
54.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
53.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
53.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
53.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
53.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
51.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
51.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
50.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
49.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
49.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
49.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
49.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
49.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
48.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
48.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
48.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
47.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
47.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
47.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
47.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
47.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
46.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
45.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
44.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
44.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
44.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
44.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
44.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
44.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
44.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
43.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
42.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
42.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
41.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
41.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
41.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
40.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
39.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
39.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
39.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
39.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
39.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
38.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
38.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
38.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
38.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
37.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
36.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
35.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
35.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
33.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
33.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
32.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
32.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
32.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
31.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
31.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
29.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
29.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
26.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCTN2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.0
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
155.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
143.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
127.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
119.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
114.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
108.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
102.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
90.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
84.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
83.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
82.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
81.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
80.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
80.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
79.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
76.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
76.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
75.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
74.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
74.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
74.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
73.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
72.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
72.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
70.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
69.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
68.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
67.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
67.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
67.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
66.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
65.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
64.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
64.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
64.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
63.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
63.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
63.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
63.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
62.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
60.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
59.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
59.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
58.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
58.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
57.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
57.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
57.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
56.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
56.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
54.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
53.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
52.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
52.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
52.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
51.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
51.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
51.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
51.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
50.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
50.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
50.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
50.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
50.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
50.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
50.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
50.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
49.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
49.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
49.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
49.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
48.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
48.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
48.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
48.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
47.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
47.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
47.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
47.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
46.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
45.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
44.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
44.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
44.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
43.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
43.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
43.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
43.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
43.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
43.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
43.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
43.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
42.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
42.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
42.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
42.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
42.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
41.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
41.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
40.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
40.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
40.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
40.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
40.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
40.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
40.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
39.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
39.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
39.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
39.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
39.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
38.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
38.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
37.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
37.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
37.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
34.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
34.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
33.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
33.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
33.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
32.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
31.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
27.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.6
921
Tumor
0.6
745
Tumor
0.5
617
Tumor
0.5
917
Tumor
0.4
957
Tumor
0.4
953
Tumor
0.4
327
Tumor
0.4
741
Tumor
0.4
478
Normal
0.4
147
Tumor
0.4
916
Normal
0.4
923
Tumor
0.3
924
Normal
0.3
536
Normal
0.3
952
Normal
0.3
355
Tumor
0.3
455
Tumor
0.3
516
Normal
0.3
873
Tumor
0.3
1022
Normal
0.3
616
Normal
0.3
128
Normal
0.3
918
Normal
0.3
714
Normal
0.3
852
Normal
0.3
498
Normal
0.2
528
Normal
0.2
558
Normal
0.2
466
Normal
0.2
978
Normal
0.2
966
Normal
0.2
514
Normal
0.2
723
Tumor
0.2
967
Tumor
0.2
922
Normal
0.2
925
Tumor
0.2
434
Normal
0.2
926
Normal
0.2
1044
Normal
0.2
955
Tumor
0.2
695
Tumor
0.2
311
Tumor
0.2
492
Normal
0.2
444
Normal
0.2
571
Tumor
0.2
553
Tumor
0.2
518
Normal
0.2
465
Tumor
0.2
685
Tumor
0.2
468
Normal
0.2
628
Normal
0.2
328
Normal
0.2
1032
Normal
0.2
722
Normal
0.2
756
Normal
0.2
728
Normal
0.2
746
Normal
0.2
126
Normal
0.2
448
Normal
0.2
546
Normal
0.2
356
Normal
0.2
474
Normal
0.2
312
Normal
0.2
1026
Normal
0.2
976
Normal
0.2
958
Normal
0.2
125
Tumor
0.2
778
Normal
0.2
862
Normal
0.2
567
Tumor
0.2
698
Normal
0.2
146
Normal
0.2
284
Normal
0.2
472
Normal
0.2
482
Normal
0.2
132
Normal
0.2
262
Normal
0.2
412
Normal
0.2
944
Normal
0.2
648
Normal
0.2
1028
Normal
0.2
981
Tumor
0.2
968
Normal
0.2
416
Normal
0.2
488
Normal
0.1
445
Tumor
0.1
538
Normal
0.1
755
Tumor
0.1
261
Tumor
0.1
816
Normal
0.1
192
Normal
0.1
864
Normal
0.1
615
Tumor
0.1
494
Normal
0.1
554
Normal
0.1
462
Normal
0.1
484
Normal
0.1
716
Normal
0.1
456
Normal
0.1
111
Normal
0.1
696
Normal
0.1
642
Normal
0.1
884
Normal
0.1
463
Tumor
0.1
436
Normal
0.1
868
Normal
0.1
697
Tumor
0.1
212
Normal
0.1
214
Normal
0.1
738
Normal
0.1
534
Normal
0.1
298
Normal
0.1
424
Normal
0.1
878
Normal
0.1
965
Tumor
0.1
452
Normal
0.1
477
Tumor
0.1
413
Tumor
0.1
524
Normal
0.1
914
Normal
0.1
142
Normal
0.1
124
Normal
0.1
866
Normal
0.1
943
Tumor
0.1
786
Normal
0.1
984
Normal
0.1
954
Normal
0.1
364
Normal
0.1
228
Normal
0.1
858
Normal
0.1
785
Tumor
0.1
982
Normal
0.1
1042
Normal
0.1
224
Normal
0.1
664
Normal
0.1
283
Tumor
0.1
268
Normal
0.1
411
Tumor
0.1
114
Normal
0.1
742
Normal
0.1
136
Normal
0.1
188
Normal
0.1
278
Normal
0.1
362
Normal
0.1
211
Tumor
0.1
272
Normal
0.1
956
Normal
0.1
618
Normal
0.1
938
Normal
0.1
737
Tumor
0.1
686
Normal
0.1
572
Normal
0.1
1043
Tumor
0.1
363
Tumor
0.1
912
Normal
0.1
467
Tumor
0.1
414
Normal
0.1
964
Normal
0.1
351
Tumor
0.1
824
Normal
0.1
426
Normal
0.1
386
Normal
0.1
525
Tumor
0.1
818
Normal
0.1
874
Normal
0.0
636
Normal
0.0
882
Normal
0.0
1014
Normal
0.0
881
Tumor
0.0
721
Tumor
0.0
297
Tumor
0.0
517
Tumor
0.0
662
Normal
0.0
421
Tumor
0.0
257
Tumor
0.0
661
Tumor
0.0
545
Tumor
0.0
232
Normal
0.0
196
Normal
0.0
376
Normal
0.0
526
Normal
0.0
352
Normal
0.0
715
Tumor
0.0
915
Tumor
0.0
672
Normal
0.0
344
Normal
0.0
187
Tumor
0.0
493
Tumor
0.0
127
Tumor
0.0
286
Normal
0.0
641
Tumor
0.0
428
Normal
0.0
983
Tumor
0.0
563
Tumor
0.0
415
Tumor
0.0
744
Normal
0.0
713
Tumor
0.0
1016
Normal
0.0
863
Tumor
0.0
435
Tumor
0.0
574
Normal
0.0
223
Tumor
0.0
537
Tumor
0.0
135
Tumor
0.0
975
Tumor
0.0
564
Normal
0.0
513
Tumor
0.0
218
Normal
0.0
138
Normal
0.0
332
Normal
0.0
342
Normal
0.0
131
Tumor
0.0
814
Normal
0.0
384
Normal
0.0
162
Normal
0.0
1046
Normal
0.0
145
Tumor
0.0
422
Normal
0.0
171
Tumor
0.0
432
Normal
0.0
222
Normal
0.0
148
Normal
0.0
464
Normal
0.0
365
Tumor
0.0
447
Tumor
0.0
271
Tumor
0.0
113
Tumor
0.0
221
Tumor
0.0
446
Normal
0.0
141
Tumor
0.0
861
Tumor
0.0
523
Tumor
0.0
394
Normal
0.0
481
Tumor
0.0
392
Normal
0.0
817
Tumor
0.0
353
Tumor
0.0
867
Tumor
0.0
533
Tumor
-0.1
727
Tumor
-0.1
357
Tumor
-0.1
851
Tumor
-0.1
375
Tumor
-0.1
172
Normal
-0.1
813
Tumor
-0.1
568
Normal
-0.1
1045
Tumor
-0.1
666
Normal
-0.1
258
Normal
-0.1
433
Tumor
-0.1
185
Tumor
-0.1
358
Normal
-0.1
277
Tumor
-0.1
227
Tumor
-0.1
354
Normal
-0.1
314
Normal
-0.1
137
Tumor
-0.1
366
Normal
-0.1
368
Normal
-0.1
231
Tumor
-0.1
635
Tumor
-0.1
396
Normal
-0.1
451
Tumor
-0.1
535
Tumor
-0.1
1025
Tumor
-0.1
195
Tumor
-0.1
647
Tumor
-0.1
361
Tumor
-0.1
341
Tumor
-0.1
724
Normal
-0.1
471
Tumor
-0.1
557
Tumor
-0.1
951
Tumor
-0.1
285
Tumor
-0.1
491
Tumor
-0.1
423
Tumor
-0.2
1021
Tumor
-0.2
385
Tumor
-0.2
483
Tumor
-0.2
387
Tumor
-0.2
911
Tumor
-0.2
186
Normal
-0.2
461
Tumor
-0.2
877
Tumor
-0.2
857
Tumor
-0.2
112
Tumor
-0.2
393
Tumor
-0.2
217
Tumor
-0.2
1031
Tumor
-0.2
777
Tumor
-0.2
388
Normal
-0.2
443
Tumor
-0.2
1013
Tumor
-0.2
343
Tumor
-0.2
963
Tumor
-0.2
815
Tumor
-0.2
883
Tumor
-0.2
213
Tumor
-0.2
161
Tumor
-0.2
367
Tumor
-0.2
515
Tumor
-0.2
473
Tumor
-0.2
823
Tumor
-0.2
313
Tumor
-0.2
267
Tumor
-0.2
527
Tumor
-0.2
937
Tumor
-0.2
123
Tumor
-0.2
977
Tumor
-0.3
427
Tumor
-0.3
627
Tumor
-0.3
743
Tumor
-0.3
383
Tumor
-0.3
395
Tumor
-0.3
191
Tumor
-0.3
497
Tumor
-0.3
573
Tumor
-0.3
1015
Tumor
-0.3
391
Tumor
-0.3
671
Tumor
-0.3
431
Tumor
-0.3
663
Tumor
-0.4
865
Tumor
-0.4
331
Tumor
-0.4
425
Tumor
-0.5
913
Tumor
-0.5
487
Tumor
-0.6
665
Tumor
-0.6
1041
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
