We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PARL is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
122.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
122.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
118.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
105.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
103.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
95.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
95.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
93.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
91.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
85.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
82.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
81.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
78.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
75.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
74.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
74.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
73.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
73.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
73.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
68.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
68.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
67.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
66.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
66.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
66.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
66.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
66.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
65.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
65.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
64.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
64.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
64.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
62.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
62.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
61.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
60.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
60.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
60.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
60.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
60.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
59.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
59.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
58.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
58.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
58.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
57.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
57.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
57.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
57.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
57.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
56.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
56.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
55.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
55.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
55.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
55.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
54.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
54.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
54.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
53.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
53.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
53.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
52.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
52.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
52.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
52.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
52.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
51.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
51.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
51.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
51.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
50.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
50.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
50.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
50.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
49.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
49.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
49.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
49.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
49.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
48.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
48.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
48.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
48.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
48.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
48.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
48.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
48.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
47.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
47.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
47.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
46.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
46.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
46.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
46.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
45.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
45.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
45.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
45.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
44.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
44.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
44.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
44.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
44.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
44.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
44.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
44.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
43.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
43.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
42.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
42.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
42.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
41.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
41.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
41.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
41.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
41.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
41.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
41.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
40.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
40.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
40.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
40.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
40.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
40.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
40.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
40.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
40.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
39.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
39.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
39.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
39.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
39.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
39.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
38.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
38.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
38.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
38.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
37.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
37.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
37.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
36.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
36.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
36.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
36.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
36.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
36.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
35.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
35.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
34.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
33.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
33.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
33.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
32.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
31.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
31.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
30.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
29.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
28.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
26.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
25.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PARL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.4
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
96.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
75.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
69.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
67.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
66.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
63.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
60.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
56.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
55.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
48.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
47.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
46.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
46.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
46.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
46.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
43.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
42.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
41.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
41.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
39.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
39.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
38.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
38.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
37.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
36.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
34.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
34.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
33.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
33.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
33.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
31.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
29.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
28.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
1.2
745
Tumor
1.1
627
Tumor
1.0
727
Tumor
0.9
967
Tumor
0.8
231
Tumor
0.8
411
Tumor
0.8
1027
Tumor
0.8
537
Tumor
0.8
525
Tumor
0.7
921
Tumor
0.7
227
Tumor
0.6
477
Tumor
0.6
615
Tumor
0.6
365
Tumor
0.6
641
Tumor
0.6
863
Tumor
0.6
777
Tumor
0.6
567
Tumor
0.5
884
Normal
0.5
363
Tumor
0.5
533
Tumor
0.5
513
Tumor
0.5
443
Tumor
0.5
1043
Tumor
0.5
393
Tumor
0.5
465
Tumor
0.5
571
Tumor
0.5
221
Tumor
0.5
487
Tumor
0.5
877
Tumor
0.5
481
Tumor
0.5
257
Tumor
0.5
1045
Tumor
0.4
186
Normal
0.4
926
Normal
0.4
737
Tumor
0.4
135
Tumor
0.4
452
Normal
0.4
145
Tumor
0.4
1046
Normal
0.4
918
Normal
0.3
517
Tumor
0.3
563
Tumor
0.3
741
Tumor
0.3
824
Normal
0.3
462
Normal
0.3
298
Normal
0.3
818
Normal
0.3
515
Tumor
0.3
865
Tumor
0.3
161
Tumor
0.3
172
Normal
0.3
328
Normal
0.3
473
Tumor
0.3
162
Normal
0.3
436
Normal
0.3
491
Tumor
0.3
534
Normal
0.3
361
Tumor
0.3
546
Normal
0.3
882
Normal
0.3
464
Normal
0.3
332
Normal
0.3
415
Tumor
0.3
1026
Normal
0.3
915
Tumor
0.3
912
Normal
0.3
466
Normal
0.3
196
Normal
0.3
878
Normal
0.3
127
Tumor
0.3
1025
Tumor
0.3
922
Normal
0.2
128
Normal
0.2
416
Normal
0.2
648
Normal
0.2
148
Normal
0.2
314
Normal
0.2
376
Normal
0.2
222
Normal
0.2
982
Normal
0.2
147
Tumor
0.2
456
Normal
0.2
636
Normal
0.2
484
Normal
0.2
858
Normal
0.2
526
Normal
0.2
955
Tumor
0.2
358
Normal
0.2
232
Normal
0.2
744
Normal
0.2
714
Normal
0.2
616
Normal
0.2
125
Tumor
0.2
924
Normal
0.2
426
Normal
0.2
385
Tumor
0.2
1016
Normal
0.2
261
Tumor
0.2
698
Normal
0.2
862
Normal
0.2
1041
Tumor
0.2
953
Tumor
0.2
514
Normal
0.2
851
Tumor
0.2
618
Normal
0.2
285
Tumor
0.2
557
Tumor
0.2
342
Normal
0.2
883
Tumor
0.2
528
Normal
0.2
873
Tumor
0.2
461
Tumor
0.2
868
Normal
0.2
132
Normal
0.2
482
Normal
0.2
857
Tumor
0.2
786
Normal
0.2
111
Normal
0.1
1042
Normal
0.1
312
Normal
0.1
213
Tumor
0.1
368
Normal
0.1
964
Normal
0.1
695
Tumor
0.1
262
Normal
0.1
286
Normal
0.1
665
Tumor
0.1
354
Normal
0.1
716
Normal
0.1
817
Tumor
0.1
364
Normal
0.1
1031
Tumor
0.1
696
Normal
0.1
746
Normal
0.1
356
Normal
0.1
278
Normal
0.1
944
Normal
0.1
664
Normal
0.1
554
Normal
0.1
327
Tumor
0.1
258
Normal
0.1
141
Tumor
0.1
428
Normal
0.1
171
Tumor
0.1
352
Normal
0.1
412
Normal
0.1
867
Tumor
0.1
957
Tumor
0.1
564
Normal
0.1
852
Normal
0.1
146
Normal
0.1
362
Normal
0.1
864
Normal
0.1
553
Tumor
0.1
1032
Normal
0.1
742
Normal
0.1
937
Tumor
0.1
218
Normal
0.1
472
Normal
0.1
142
Normal
0.1
394
Normal
0.1
267
Tumor
0.1
272
Normal
0.1
468
Normal
0.1
214
Normal
0.1
1028
Normal
0.0
628
Normal
0.0
114
Normal
0.0
463
Tumor
0.0
642
Normal
0.0
136
Normal
0.0
471
Tumor
0.0
414
Normal
0.0
268
Normal
0.0
188
Normal
0.0
756
Normal
0.0
123
Tumor
0.0
435
Tumor
0.0
516
Normal
0.0
113
Tumor
0.0
483
Tumor
0.0
432
Normal
0.0
488
Normal
0.0
978
Normal
0.0
388
Normal
0.0
816
Normal
0.0
137
Tumor
0.0
861
Tumor
0.0
195
Tumor
0.0
527
Tumor
0.0
911
Tumor
0.0
351
Tumor
0.0
916
Normal
0.0
535
Tumor
0.0
187
Tumor
0.0
755
Tumor
0.0
433
Tumor
0.0
728
Normal
0.0
568
Normal
0.0
558
Normal
0.0
722
Normal
0.0
451
Tumor
0.0
574
Normal
0.0
823
Tumor
0.0
738
Normal
0.0
126
Normal
0.0
866
Normal
0.0
914
Normal
0.0
715
Tumor
0.0
723
Tumor
0.0
984
Normal
0.0
366
Normal
0.0
224
Normal
0.0
671
Tumor
0.0
422
Normal
0.0
384
Normal
0.0
925
Tumor
0.0
124
Normal
0.0
983
Tumor
0.0
963
Tumor
0.0
212
Normal
-0.1
1014
Normal
-0.1
666
Normal
-0.1
367
Tumor
-0.1
524
Normal
-0.1
446
Normal
-0.1
494
Normal
-0.1
448
Normal
-0.1
353
Tumor
-0.1
572
Normal
-0.1
538
Normal
-0.1
271
Tumor
-0.1
724
Normal
-0.1
956
Normal
-0.1
425
Tumor
-0.1
952
Normal
-0.1
1022
Normal
-0.1
424
Normal
-0.1
396
Normal
-0.1
778
Normal
-0.1
421
Tumor
-0.1
427
Tumor
-0.1
938
Normal
-0.1
874
Normal
-0.1
344
Normal
-0.1
391
Tumor
-0.1
434
Normal
-0.1
423
Tumor
-0.1
518
Normal
-0.1
478
Normal
-0.1
357
Tumor
-0.1
386
Normal
-0.1
672
Normal
-0.1
431
Tumor
-0.1
228
Normal
-0.1
975
Tumor
-0.1
743
Tumor
-0.2
284
Normal
-0.2
954
Normal
-0.2
138
Normal
-0.2
981
Tumor
-0.2
467
Tumor
-0.2
185
Tumor
-0.2
383
Tumor
-0.2
392
Normal
-0.2
223
Tumor
-0.2
923
Tumor
-0.2
493
Tumor
-0.2
355
Tumor
-0.2
662
Normal
-0.2
617
Tumor
-0.2
686
Normal
-0.2
1015
Tumor
-0.2
966
Normal
-0.2
976
Normal
-0.2
1044
Normal
-0.2
474
Normal
-0.2
713
Tumor
-0.2
1021
Tumor
-0.2
341
Tumor
-0.2
958
Normal
-0.2
968
Normal
-0.2
697
Tumor
-0.3
965
Tumor
-0.3
1013
Tumor
-0.3
191
Tumor
-0.3
297
Tumor
-0.3
387
Tumor
-0.3
217
Tumor
-0.3
721
Tumor
-0.3
685
Tumor
-0.3
815
Tumor
-0.3
785
Tumor
-0.3
497
Tumor
-0.3
192
Normal
-0.3
663
Tumor
-0.4
131
Tumor
-0.4
498
Normal
-0.4
455
Tumor
-0.4
917
Tumor
-0.4
977
Tumor
-0.4
943
Tumor
-0.4
444
Normal
-0.4
492
Normal
-0.4
277
Tumor
-0.5
311
Tumor
-0.5
375
Tumor
-0.5
313
Tumor
-0.5
331
Tumor
-0.5
573
Tumor
-0.5
447
Tumor
-0.5
545
Tumor
-0.5
647
Tumor
-0.5
881
Tumor
-0.5
661
Tumor
-0.5
536
Normal
-0.5
445
Tumor
-0.6
343
Tumor
-0.6
283
Tumor
-0.6
913
Tumor
-0.6
523
Tumor
-0.6
395
Tumor
-0.6
814
Normal
-0.7
413
Tumor
-0.7
813
Tumor
-0.7
211
Tumor
-0.8
635
Tumor
-0.9
951
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.