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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.3
Number of samples
231
Samples
Sample
Description
TPM
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
355
Tumor
2.0
161
Tumor
1.7
957
Tumor
1.7
925
Tumor
1.6
285
Tumor
1.6
865
Tumor
1.5
411
Tumor
1.3
663
Tumor
1.3
147
Tumor
1.3
742
Normal
1.1
435
Tumor
1.1
744
Normal
1.1
745
Tumor
1.1
723
Tumor
1.1
953
Tumor
1.0
196
Normal
1.0
423
Tumor
0.9
738
Normal
0.9
487
Tumor
0.9
914
Normal
0.9
421
Tumor
0.8
728
Normal
0.8
937
Tumor
0.8
851
Tumor
0.8
923
Tumor
0.8
427
Tumor
0.7
227
Tumor
0.7
462
Normal
0.7
222
Normal
0.7
618
Normal
0.7
425
Tumor
0.7
223
Tumor
0.6
567
Tumor
0.6
616
Normal
0.6
642
Normal
0.6
452
Normal
0.6
415
Tumor
0.6
1014
Normal
0.6
482
Normal
0.6
466
Normal
0.6
912
Normal
0.6
1016
Normal
0.6
214
Normal
0.6
981
Tumor
0.5
824
Normal
0.5
882
Normal
0.5
228
Normal
0.5
722
Normal
0.5
185
Tumor
0.5
212
Normal
0.5
617
Tumor
0.5
628
Normal
0.5
443
Tumor
0.5
187
Tumor
0.5
564
Normal
0.5
863
Tumor
0.4
984
Normal
0.4
926
Normal
0.4
132
Normal
0.4
672
Normal
0.4
695
Tumor
0.4
686
Normal
0.4
982
Normal
0.4
361
Tumor
0.3
943
Tumor
0.3
464
Normal
0.3
818
Normal
0.3
472
Normal
0.3
873
Tumor
0.3
716
Normal
0.3
568
Normal
0.3
746
Normal
0.3
755
Tumor
0.3
356
Normal
0.3
858
Normal
0.3
574
Normal
0.3
368
Normal
0.3
571
Tumor
0.3
392
Normal
0.3
1015
Tumor
0.3
648
Normal
0.2
572
Normal
0.2
426
Normal
0.2
224
Normal
0.2
696
Normal
0.2
978
Normal
0.2
1013
Tumor
0.2
944
Normal
0.2
436
Normal
0.2
714
Normal
0.2
737
Tumor
0.2
286
Normal
0.2
488
Normal
0.2
884
Normal
0.2
432
Normal
0.2
468
Normal
0.2
721
Tumor
0.2
284
Normal
0.2
816
Normal
0.2
964
Normal
0.2
977
Tumor
0.2
866
Normal
0.2
456
Normal
0.2
852
Normal
0.2
484
Normal
0.2
394
Normal
0.2
956
Normal
0.1
958
Normal
0.1
172
Normal
0.1
412
Normal
0.1
976
Normal
0.1
647
Tumor
0.1
388
Normal
0.1
878
Normal
0.1
218
Normal
0.1
366
Normal
0.1
685
Tumor
0.1
558
Normal
0.1
954
Normal
0.1
664
Normal
0.1
857
Tumor
0.1
186
Normal
0.1
922
Normal
0.1
756
Normal
0.1
481
Tumor
0.1
445
Tumor
0.1
364
Normal
0.0
666
Normal
0.0
416
Normal
0.0
365
Tumor
0.0
422
Normal
0.0
474
Normal
0.0
136
Normal
0.0
955
Tumor
0.0
162
Normal
0.0
145
Tumor
0.0
221
Tumor
0.0
446
Normal
0.0
148
Normal
0.0
376
Normal
-0.1
424
Normal
-0.1
662
Normal
-0.1
414
Normal
-0.1
478
Normal
-0.1
393
Tumor
-0.1
963
Tumor
-0.1
983
Tumor
-0.1
636
Normal
-0.1
918
Normal
-0.1
563
Tumor
-0.1
138
Normal
-0.1
428
Normal
-0.1
938
Normal
-0.1
396
Normal
-0.1
786
Normal
-0.1
492
Normal
-0.2
494
Normal
-0.2
433
Tumor
-0.2
968
Normal
-0.2
444
Normal
-0.2
815
Tumor
-0.2
778
Normal
-0.2
362
Normal
-0.2
713
Tumor
-0.2
951
Tumor
-0.2
434
Normal
-0.2
813
Tumor
-0.2
384
Normal
-0.2
727
Tumor
-0.2
965
Tumor
-0.2
383
Tumor
-0.2
451
Tumor
-0.3
491
Tumor
-0.3
142
Normal
-0.3
386
Normal
-0.3
1032
Normal
-0.3
146
Normal
-0.3
328
Normal
-0.3
924
Normal
-0.3
465
Tumor
-0.3
952
Normal
-0.3
864
Normal
-0.3
461
Tumor
-0.3
862
Normal
-0.3
814
Normal
-0.3
715
Tumor
-0.4
777
Tumor
-0.4
741
Tumor
-0.4
557
Tumor
-0.4
327
Tumor
-0.4
131
Tumor
-0.4
391
Tumor
-0.4
1022
Normal
-0.4
823
Tumor
-0.4
375
Tumor
-0.4
868
Normal
-0.4
785
Tumor
-0.5
477
Tumor
-0.5
874
Normal
-0.5
188
Normal
-0.5
498
Normal
-0.5
967
Tumor
-0.5
1028
Normal
-0.5
463
Tumor
-0.5
915
Tumor
-0.6
661
Tumor
-0.6
916
Normal
-0.6
137
Tumor
-0.6
1026
Normal
-0.6
724
Normal
-0.6
497
Tumor
-0.6
671
Tumor
-0.6
1041
Tumor
-0.7
573
Tumor
-0.7
367
Tumor
-0.7
473
Tumor
-0.7
917
Tumor
-0.8
431
Tumor
-0.8
1027
Tumor
-0.8
217
Tumor
-0.8
413
Tumor
-0.8
363
Tumor
-0.8
817
Tumor
-0.8
171
Tumor
-0.9
966
Normal
-0.9
1042
Normal
-0.9
665
Tumor
-1.0
283
Tumor
-1.0
455
Tumor
-1.0
141
Tumor
-1.0
627
Tumor
-1.0
1031
Tumor
-1.0
921
Tumor
-1.1
1025
Tumor
-1.1
483
Tumor
-1.1
192
Normal
-1.1
387
Tumor
-1.1
471
Tumor
-1.2
743
Tumor
-1.2
467
Tumor
-1.2
191
Tumor
-1.2
861
Tumor
-1.2
975
Tumor
-1.4
883
Tumor
-1.4
877
Tumor
-1.5
195
Tumor
-1.5
913
Tumor
-1.5
385
Tumor
-1.5
615
Tumor
-1.6
493
Tumor
-1.6
867
Tumor
-1.6
395
Tumor
-1.6
881
Tumor
-1.7
213
Tumor
-1.7
135
Tumor
-1.7
1021
Tumor
-2.0
641
Tumor
-2.0
211
Tumor
-2.0
911
Tumor
-2.1
635
Tumor
-2.3
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
297
Tumor
N/A
298
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
311
Tumor
N/A
553
Tumor
N/A
312
Normal
N/A
554
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
