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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3BP5L is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3BP5L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
257
Tumor
1.1
147
Tumor
1.0
921
Tumor
1.0
743
Tumor
1.0
131
Tumor
0.9
1013
Tumor
0.9
1027
Tumor
0.8
727
Tumor
0.8
473
Tumor
0.8
517
Tumor
0.8
957
Tumor
0.8
963
Tumor
0.8
975
Tumor
0.7
553
Tumor
0.7
1025
Tumor
0.7
917
Tumor
0.7
393
Tumor
0.7
817
Tumor
0.6
171
Tumor
0.6
911
Tumor
0.6
385
Tumor
0.6
977
Tumor
0.6
221
Tumor
0.6
685
Tumor
0.6
357
Tumor
0.5
545
Tumor
0.5
135
Tumor
0.5
737
Tumor
0.5
951
Tumor
0.5
665
Tumor
0.5
191
Tumor
0.5
745
Tumor
0.5
785
Tumor
0.5
1021
Tumor
0.5
445
Tumor
0.5
123
Tumor
0.5
343
Tumor
0.5
965
Tumor
0.5
535
Tumor
0.5
881
Tumor
0.4
923
Tumor
0.4
724
Normal
0.4
571
Tumor
0.4
471
Tumor
0.4
967
Tumor
0.4
271
Tumor
0.4
533
Tumor
0.4
925
Tumor
0.4
463
Tumor
0.4
573
Tumor
0.4
823
Tumor
0.4
355
Tumor
0.4
213
Tumor
0.4
455
Tumor
0.4
527
Tumor
0.4
537
Tumor
0.4
435
Tumor
0.4
641
Tumor
0.4
351
Tumor
0.3
647
Tumor
0.3
695
Tumor
0.3
498
Normal
0.3
671
Tumor
0.3
518
Normal
0.3
327
Tumor
0.3
283
Tumor
0.3
513
Tumor
0.3
861
Tumor
0.3
145
Tumor
0.3
697
Tumor
0.2
277
Tumor
0.2
873
Tumor
0.2
813
Tumor
0.2
983
Tumor
0.2
447
Tumor
0.2
481
Tumor
0.2
661
Tumor
0.2
227
Tumor
0.2
721
Tumor
0.2
217
Tumor
0.2
1043
Tumor
0.2
411
Tumor
0.2
218
Normal
0.2
443
Tumor
0.2
741
Tumor
0.2
138
Normal
0.2
924
Normal
0.2
1045
Tumor
0.2
465
Tumor
0.2
311
Tumor
0.2
557
Tumor
0.1
663
Tumor
0.1
141
Tumor
0.1
214
Normal
0.1
926
Normal
0.1
285
Tumor
0.1
431
Tumor
0.1
297
Tumor
0.1
222
Normal
0.1
361
Tumor
0.1
125
Tumor
0.1
195
Tumor
0.1
366
Normal
0.1
146
Normal
0.1
365
Tumor
0.1
1031
Tumor
0.1
915
Tumor
0.1
112
Tumor
0.1
863
Tumor
0.1
523
Tumor
0.1
715
Tumor
0.1
484
Normal
0.1
877
Tumor
0.1
916
Normal
0.1
918
Normal
0.1
423
Tumor
0.1
376
Normal
0.1
815
Tumor
0.1
867
Tumor
0.1
914
Normal
0.1
982
Normal
0.1
635
Tumor
0.1
192
Normal
0.1
956
Normal
0.1
387
Tumor
0.1
978
Normal
0.1
525
Tumor
0.1
865
Tumor
0.0
1026
Normal
0.0
922
Normal
0.0
367
Tumor
0.0
231
Tumor
0.0
424
Normal
0.0
433
Tumor
0.0
1016
Normal
0.0
368
Normal
0.0
187
Tumor
0.0
462
Normal
0.0
136
Normal
0.0
882
Normal
0.0
482
Normal
0.0
714
Normal
0.0
515
Tumor
0.0
472
Normal
0.0
1022
Normal
0.0
912
Normal
0.0
514
Normal
0.0
1014
Normal
0.0
851
Tumor
0.0
478
Normal
0.0
955
Tumor
0.0
137
Tumor
0.0
258
Normal
0.0
617
Tumor
0.0
196
Normal
0.0
944
Normal
0.0
384
Normal
0.0
777
Tumor
0.0
395
Tumor
0.0
1028
Normal
0.0
1041
Tumor
0.0
546
Normal
0.0
353
Tumor
0.0
261
Tumor
0.0
723
Tumor
0.0
268
Normal
0.0
1032
Normal
0.0
534
Normal
0.0
722
Normal
0.0
286
Normal
0.0
563
Tumor
0.0
448
Normal
-0.1
113
Tumor
-0.1
232
Normal
-0.1
426
Normal
-0.1
188
Normal
-0.1
362
Normal
-0.1
816
Normal
-0.1
958
Normal
-0.1
132
Normal
-0.1
331
Tumor
-0.1
524
Normal
-0.1
436
Normal
-0.1
574
Normal
-0.1
358
Normal
-0.1
375
Tumor
-0.1
976
Normal
-0.1
212
Normal
-0.1
937
Tumor
-0.1
884
Normal
-0.1
185
Tumor
-0.1
554
Normal
-0.1
1044
Normal
-0.1
262
Normal
-0.1
172
Normal
-0.1
966
Normal
-0.1
964
Normal
-0.1
516
Normal
-0.1
386
Normal
-0.1
874
Normal
-0.1
984
Normal
-0.1
148
Normal
-0.1
713
Tumor
-0.1
616
Normal
-0.1
284
Normal
-0.1
814
Normal
-0.1
558
Normal
-0.1
627
Tumor
-0.1
943
Tumor
-0.1
493
Tumor
-0.1
186
Normal
-0.1
224
Normal
-0.1
564
Normal
-0.1
415
Tumor
-0.1
1015
Tumor
-0.1
428
Normal
-0.1
328
Normal
-0.1
298
Normal
-0.1
852
Normal
-0.1
866
Normal
-0.1
388
Normal
-0.1
272
Normal
-0.2
267
Tumor
-0.2
344
Normal
-0.2
686
Normal
-0.2
857
Tumor
-0.2
422
Normal
-0.2
538
Normal
-0.2
312
Normal
-0.2
738
Normal
-0.2
642
Normal
-0.2
696
Normal
-0.2
456
Normal
-0.2
913
Tumor
-0.2
968
Normal
-0.2
868
Normal
-0.2
716
Normal
-0.2
421
Tumor
-0.2
572
Normal
-0.2
536
Normal
-0.2
396
Normal
-0.2
744
Normal
-0.2
162
Normal
-0.2
461
Tumor
-0.2
128
Normal
-0.2
728
Normal
-0.2
488
Normal
-0.2
698
Normal
-0.2
824
Normal
-0.2
414
Normal
-0.2
636
Normal
-0.2
883
Tumor
-0.2
114
Normal
-0.2
1046
Normal
-0.2
567
Tumor
-0.2
434
Normal
-0.2
568
Normal
-0.2
858
Normal
-0.2
394
Normal
-0.2
468
Normal
-0.2
666
Normal
-0.2
413
Tumor
-0.2
142
Normal
-0.2
466
Normal
-0.2
615
Tumor
-0.2
1042
Normal
-0.2
664
Normal
-0.2
952
Normal
-0.2
954
Normal
-0.2
786
Normal
-0.2
878
Normal
-0.2
228
Normal
-0.2
383
Tumor
-0.2
278
Normal
-0.2
648
Normal
-0.3
127
Tumor
-0.3
451
Tumor
-0.3
363
Tumor
-0.3
126
Normal
-0.3
864
Normal
-0.3
392
Normal
-0.3
672
Normal
-0.3
938
Normal
-0.3
446
Normal
-0.3
981
Tumor
-0.3
528
Normal
-0.3
467
Tumor
-0.3
211
Tumor
-0.3
391
Tumor
-0.3
526
Normal
-0.3
452
Normal
-0.3
474
Normal
-0.3
342
Normal
-0.3
756
Normal
-0.3
818
Normal
-0.3
111
Normal
-0.3
628
Normal
-0.3
742
Normal
-0.3
618
Normal
-0.3
862
Normal
-0.3
497
Tumor
-0.3
464
Normal
-0.3
953
Tumor
-0.3
494
Normal
-0.3
425
Tumor
-0.3
487
Tumor
-0.3
161
Tumor
-0.3
778
Normal
-0.4
314
Normal
-0.4
444
Normal
-0.4
427
Tumor
-0.4
352
Normal
-0.4
662
Normal
-0.4
364
Normal
-0.4
341
Tumor
-0.4
223
Tumor
-0.4
755
Tumor
-0.4
746
Normal
-0.4
124
Normal
-0.4
432
Normal
-0.4
416
Normal
-0.4
332
Normal
-0.4
356
Normal
-0.5
491
Tumor
-0.5
477
Tumor
-0.5
412
Normal
-0.5
354
Normal
-0.5
483
Tumor
-0.7
492
Normal
-0.7
313
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
