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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS22 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
82.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
76.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
72.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
60.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
59.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
50.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
50.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
49.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
49.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
48.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
47.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
46.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
46.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
45.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
45.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
45.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
44.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
44.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
44.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
44.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
43.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
43.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
42.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
41.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
40.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
40.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
39.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
39.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
39.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
39.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
38.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
37.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
37.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
37.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
37.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
36.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
36.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
36.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
35.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
33.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
33.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
32.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
32.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
32.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
31.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
31.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
31.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
29.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
29.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
29.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
28.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
27.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
27.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
26.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
26.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
24.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
23.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS22 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.8
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
90.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
80.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
61.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
56.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
53.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
51.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
49.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
49.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
48.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
47.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
46.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
45.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
45.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
45.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
45.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
45.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
44.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
44.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
43.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
42.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
42.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
41.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
41.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
41.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
41.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
41.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
40.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
40.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
40.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
39.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
39.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
39.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
39.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
38.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
38.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
38.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
38.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
37.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
37.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
36.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
35.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
35.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
34.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
33.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
33.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
33.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
32.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
32.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
30.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
29.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
28.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
28.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
26.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
26.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.4
1041
Tumor
1.2
411
Tumor
1.1
227
Tumor
1.1
231
Tumor
1.0
435
Tumor
0.9
557
Tumor
0.9
477
Tumor
0.8
713
Tumor
0.8
865
Tumor
0.8
741
Tumor
0.8
571
Tumor
0.8
537
Tumor
0.7
967
Tumor
0.7
363
Tumor
0.6
525
Tumor
0.6
951
Tumor
0.6
483
Tumor
0.6
267
Tumor
0.6
423
Tumor
0.6
567
Tumor
0.6
1013
Tumor
0.5
171
Tumor
0.5
957
Tumor
0.5
715
Tumor
0.5
915
Tumor
0.5
1025
Tumor
0.5
361
Tumor
0.5
553
Tumor
0.5
745
Tumor
0.5
953
Tumor
0.5
685
Tumor
0.5
663
Tumor
0.5
427
Tumor
0.5
937
Tumor
0.5
147
Tumor
0.5
221
Tumor
0.4
695
Tumor
0.4
327
Tumor
0.4
145
Tumor
0.4
123
Tumor
0.4
743
Tumor
0.4
755
Tumor
0.4
257
Tumor
0.4
127
Tumor
0.4
883
Tumor
0.4
351
Tumor
0.4
823
Tumor
0.4
981
Tumor
0.4
465
Tumor
0.4
665
Tumor
0.3
861
Tumor
0.3
1021
Tumor
0.3
977
Tumor
0.3
271
Tumor
0.3
357
Tumor
0.3
517
Tumor
0.3
911
Tumor
0.3
393
Tumor
0.3
367
Tumor
0.3
533
Tumor
0.3
913
Tumor
0.3
965
Tumor
0.3
573
Tumor
0.3
497
Tumor
0.3
1031
Tumor
0.3
413
Tumor
0.3
467
Tumor
0.2
867
Tumor
0.2
387
Tumor
0.2
223
Tumor
0.2
724
Normal
0.2
641
Tumor
0.2
355
Tumor
0.2
877
Tumor
0.2
983
Tumor
0.2
187
Tumor
0.2
727
Tumor
0.2
513
Tumor
0.2
923
Tumor
0.2
926
Normal
0.2
356
Normal
0.2
395
Tumor
0.2
535
Tumor
0.2
868
Normal
0.2
195
Tumor
0.2
131
Tumor
0.1
493
Tumor
0.1
353
Tumor
0.1
261
Tumor
0.1
471
Tumor
0.1
365
Tumor
0.1
721
Tumor
0.1
285
Tumor
0.1
481
Tumor
0.1
851
Tumor
0.1
912
Normal
0.1
463
Tumor
0.1
191
Tumor
0.1
647
Tumor
0.1
433
Tumor
0.1
482
Normal
0.1
491
Tumor
0.1
514
Normal
0.1
391
Tumor
0.1
277
Tumor
0.1
777
Tumor
0.1
858
Normal
0.0
385
Tumor
0.0
474
Normal
0.0
914
Normal
0.0
671
Tumor
0.0
817
Tumor
0.0
328
Normal
0.0
978
Normal
0.0
331
Tumor
0.0
824
Normal
0.0
925
Tumor
0.0
466
Normal
0.0
528
Normal
0.0
815
Tumor
0.0
272
Normal
0.0
944
Normal
0.0
963
Tumor
0.0
487
Tumor
0.0
436
Normal
0.0
697
Tumor
0.0
113
Tumor
0.0
1032
Normal
0.0
564
Normal
0.0
1014
Normal
0.0
431
Tumor
0.0
881
Tumor
0.0
416
Normal
0.0
635
Tumor
0.0
864
Normal
0.0
313
Tumor
0.0
462
Normal
0.0
554
Normal
0.0
523
Tumor
0.0
873
Tumor
0.0
484
Normal
0.0
964
Normal
0.0
916
Normal
-0.1
1022
Normal
-0.1
196
Normal
-0.1
534
Normal
-0.1
1042
Normal
-0.1
572
Normal
-0.1
696
Normal
-0.1
738
Normal
-0.1
213
Tumor
-0.1
728
Normal
-0.1
148
Normal
-0.1
866
Normal
-0.1
722
Normal
-0.1
222
Normal
-0.1
982
Normal
-0.1
472
Normal
-0.1
161
Tumor
-0.1
617
Tumor
-0.1
1046
Normal
-0.1
756
Normal
-0.1
516
Normal
-0.1
526
Normal
-0.1
616
Normal
-0.1
1043
Tumor
-0.1
816
Normal
-0.1
258
Normal
-0.1
451
Tumor
-0.1
212
Normal
-0.1
862
Normal
-0.1
364
Normal
-0.1
518
Normal
-0.1
952
Normal
-0.1
648
Normal
-0.1
723
Tumor
-0.1
375
Tumor
-0.1
615
Tumor
-0.1
188
Normal
-0.1
956
Normal
-0.1
112
Tumor
-0.1
778
Normal
-0.1
432
Normal
-0.1
128
Normal
-0.1
786
Normal
-0.1
428
Normal
-0.1
464
Normal
-0.1
284
Normal
-0.1
132
Normal
-0.2
918
Normal
-0.2
546
Normal
-0.2
714
Normal
-0.2
874
Normal
-0.2
214
Normal
-0.2
412
Normal
-0.2
938
Normal
-0.2
1026
Normal
-0.2
162
Normal
-0.2
1028
Normal
-0.2
716
Normal
-0.2
232
Normal
-0.2
618
Normal
-0.2
958
Normal
-0.2
422
Normal
-0.2
185
Tumor
-0.2
818
Normal
-0.2
447
Tumor
-0.2
388
Normal
-0.2
742
Normal
-0.2
884
Normal
-0.2
661
Tumor
-0.2
746
Normal
-0.2
424
Normal
-0.2
1016
Normal
-0.2
114
Normal
-0.2
664
Normal
-0.2
955
Tumor
-0.2
228
Normal
-0.2
297
Tumor
-0.2
628
Normal
-0.2
882
Normal
-0.2
312
Normal
-0.2
878
Normal
-0.2
785
Tumor
-0.2
1045
Tumor
-0.2
358
Normal
-0.2
857
Tumor
-0.2
446
Normal
-0.2
954
Normal
-0.2
136
Normal
-0.2
341
Tumor
-0.2
376
Normal
-0.2
211
Tumor
-0.3
662
Normal
-0.3
448
Normal
-0.3
434
Normal
-0.3
642
Normal
-0.3
1015
Tumor
-0.3
415
Tumor
-0.3
666
Normal
-0.3
976
Normal
-0.3
922
Normal
-0.3
478
Normal
-0.3
396
Normal
-0.3
494
Normal
-0.3
968
Normal
-0.3
686
Normal
-0.3
574
Normal
-0.3
527
Tumor
-0.3
456
Normal
-0.3
366
Normal
-0.3
172
Normal
-0.3
111
Normal
-0.3
975
Tumor
-0.3
568
Normal
-0.3
414
Normal
-0.3
362
Normal
-0.3
426
Normal
-0.3
314
Normal
-0.3
984
Normal
-0.3
461
Tumor
-0.3
135
Tumor
-0.3
386
Normal
-0.3
268
Normal
-0.3
698
Normal
-0.3
383
Tumor
-0.3
224
Normal
-0.3
468
Normal
-0.3
278
Normal
-0.3
286
Normal
-0.3
1027
Tumor
-0.3
368
Normal
-0.3
924
Normal
-0.3
558
Normal
-0.4
444
Normal
-0.4
142
Normal
-0.4
217
Tumor
-0.4
852
Normal
-0.4
126
Normal
-0.4
488
Normal
-0.4
262
Normal
-0.4
524
Normal
-0.4
298
Normal
-0.4
545
Tumor
-0.4
186
Normal
-0.4
943
Tumor
-0.4
141
Tumor
-0.4
452
Normal
-0.4
394
Normal
-0.4
392
Normal
-0.4
627
Tumor
-0.4
146
Normal
-0.4
737
Tumor
-0.4
352
Normal
-0.5
917
Tumor
-0.5
636
Normal
-0.5
1044
Normal
-0.5
498
Normal
-0.5
538
Normal
-0.5
966
Normal
-0.5
137
Tumor
-0.5
192
Normal
-0.5
425
Tumor
-0.5
311
Tumor
-0.5
921
Tumor
-0.5
563
Tumor
-0.5
445
Tumor
-0.5
124
Normal
-0.5
814
Normal
-0.5
138
Normal
-0.5
421
Tumor
-0.5
384
Normal
-0.5
515
Tumor
-0.5
536
Normal
-0.5
283
Tumor
-0.5
344
Normal
-0.6
125
Tumor
-0.6
863
Tumor
-0.6
492
Normal
-0.6
813
Tumor
-0.6
455
Tumor
-0.6
354
Normal
-0.6
342
Normal
-0.6
672
Normal
-0.6
218
Normal
-0.6
443
Tumor
-0.7
343
Tumor
-0.7
332
Normal
-0.7
744
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
