MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.2 nTPM
HPA Brain:18.4 nTPM
GTEx:21.2 nTPM
FANTOM5:78.3 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:33.2 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 18.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.8
2019 Male, age 18, unknown 20.5
1833 Male, age 53, unknown 18.4
1870 Female, age 42, unknown 18.1
2411 Female, age 72, unknown 18.0
1827 Male, age 72, unknown 16.7
2828 Female, age 72, unknown 14.1
2219 Male, age 76, both hemispheres 13.8
2666 Male, age 74, left hemisphere 13.6
1830 Male, age 51, unknown 13.1
2586 Male, age 75, left hemisphere 12.0
Dorsal raphe nucleus
nTPM: 17.7
2298 Female, age 72, unknown 19.9
2750 Male, age 76, both hemispheres 19.8
1828 Male, age 53, unknown 18.4
2047 Male, age 72, unknown 16.1
2016 Female, age 72, unknown 14.2
Inferior colliculus
nTPM: 16.7
2097 Female, age 72, unknown 20.9
1848 Female, age 42, unknown 16.8
1890 Male, age 53, unknown 15.0
2849 Male, age 72, unknown 14.0
Median raphe nucleus
nTPM: 18.4
2220 Male, age 76, midline 18.4
Periaquaductal grey, anterior
nTPM: 14.9
1947 Male, age 18, unknown 16.1
1795 Male, age 51, unknown 14.3
2502 Female, age 75, unknown 14.3
Periaquaductal grey, dorsal
nTPM: 14.4
2464 Female, age 72, unknown 16.0
2850 Male, age 76, both hemispheres 14.7
1840 Male, age 53, unknown 13.6
1831 Male, age 72, unknown 13.5
Periaquaductal grey, lateral
nTPM: 14.2
2272 Male, age 74, both hemispheres 17.1
2053 Male, age 18, unknown 13.7
2140 Male, age 76, both hemispheres 11.9
Pretectal area
nTPM: 18.0
1817 Female, age 42, unknown 21.6
2007 Male, age 72, unknown 21.3
1944 Female, age 72, unknown 20.5
1816 Male, age 51, unknown 20.0
1815 Male, age 53, unknown 19.7
2224 Female, age 72, unknown 19.2
2667 Female, age 75, unknown 19.0
2273 Male, age 74, both hemispheres 17.4
2825 Male, age 18, unknown 14.2
2407 Male, age 75, both hemispheres 13.0
2316 Male, age 76, right hemisphere 11.8
Red nucleus
nTPM: 18.4
1821 Female, age 72, unknown 23.5
2503 Female, age 72, unknown 21.1
1865 Male, age 51, unknown 20.5
1954 Female, age 42, unknown 20.0
2823 Male, age 76, right hemisphere 19.6
1904 Male, age 53, unknown 18.9
2725 Female, age 75, unknown 18.7
2785 Male, age 18, unknown 18.4
2227 Male, age 72, unknown 17.4
2769 Male, age 72, unknown 17.4
2588 Male, age 74, left hemisphere 14.5
2584 Male, age 75, left hemisphere 10.7
Substantia nigra
nTPM: 18.3
1889 Female, age 72, unknown 22.6
2241 Male, age 72, unknown 21.8
1851 Male, age 51, unknown 21.4
1916 Female, age 42, unknown 21.0
1941 Male, age 53, unknown 18.5
2699 Male, age 18, unknown 17.6
2409 Female, age 72, unknown 17.3
2590 Female, age 75, unknown 16.2
2665 Male, age 74, both hemispheres 14.8
2583 Male, age 75, right hemisphere 12.1
Superior colliculus
nTPM: 15.7
2587 Male, age 74, left hemisphere 18.8
2087 Female, age 72, unknown 18.4
1895 Male, age 76, right hemisphere 18.3
1796 Male, age 53, unknown 16.5
1913 Female, age 42, unknown 16.3
2668 Female, age 75, unknown 16.0
1839 Male, age 51, unknown 15.1
1995 Male, age 72, unknown 14.5
2261 Male, age 18, unknown 13.9
2664 Male, age 75, both hemispheres 8.7
Ventral tegmental area
nTPM: 17.8
2410 Female, age 72, unknown 23.3
1915 Female, age 42, unknown 19.1
2218 Male, age 76, both hemispheres 19.1
2223 Female, age 72, unknown 18.0
1942 Male, age 51, unknown 14.4
2021 Male, age 53, unknown 12.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.2
Samples: 139

Max nTPM: 38.9
Min nTPM: 12.0
Std nTPM: 4.6
Median nTPM: 20.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 38.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 35.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 34.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 32.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 30.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 29.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 29.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 29.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 28.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 28.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 28.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 78.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.3
FF:10158-103A5 76 years, female 78.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.9
Samples: 4

Max nTPM: 16.8
Min nTPM: 14.2
Sample A Female 16.8
Sample B Female 14.2
Sample C Male 16.2
Sample D Male 16.5
Midbrain
nTPM: 16.7
Samples: 4

Max nTPM: 17.5
Min nTPM: 15.5
Sample A Female 17.4
Sample B Female 17.5
Sample C Male 15.5
Sample D Male 16.3
Periaqueductal gray
nTPM: 15.9
Samples: 3

Max nTPM: 16.6
Min nTPM: 15.2
Sample B Female 16.6
Sample C Male 15.8
Sample D Male 15.2
Superior colliculi
nTPM: 15.1
Samples: 4

Max nTPM: 17.2
Min nTPM: 12.0
Sample A Female 15.4
Sample B Female 12.0
Sample C Male 17.2
Sample D Male 15.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.3
Samples: 4

Max nTPM: 34.0
Min nTPM: 31.9
Sample A Male 33.6
Sample B Male 33.5
Sample C Female 31.9
Sample D Female 34.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
68743996 Antisense, RP_050203_02_A04, Mouse strain C57BL/6J (56 days, male) 3.5

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