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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VCPIP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VCPIP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.1
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
1.5
715
Tumor
1.1
231
Tumor
1.0
267
Tumor
1.0
1041
Tumor
0.9
925
Tumor
0.8
641
Tumor
0.7
112
Tumor
0.7
823
Tumor
0.7
257
Tumor
0.6
963
Tumor
0.6
937
Tumor
0.6
471
Tumor
0.6
1025
Tumor
0.6
745
Tumor
0.6
861
Tumor
0.6
851
Tumor
0.5
285
Tumor
0.5
685
Tumor
0.5
135
Tumor
0.4
443
Tumor
0.4
537
Tumor
0.4
435
Tumor
0.4
375
Tumor
0.4
185
Tumor
0.4
427
Tumor
0.4
697
Tumor
0.4
483
Tumor
0.4
817
Tumor
0.4
343
Tumor
0.4
473
Tumor
0.4
127
Tumor
0.4
533
Tumor
0.4
951
Tumor
0.4
445
Tumor
0.4
663
Tumor
0.4
367
Tumor
0.4
567
Tumor
0.3
617
Tumor
0.3
467
Tumor
0.3
221
Tumor
0.3
525
Tumor
0.3
967
Tumor
0.3
123
Tumor
0.3
341
Tumor
0.3
877
Tumor
0.3
915
Tumor
0.3
477
Tumor
0.3
545
Tumor
0.3
665
Tumor
0.3
131
Tumor
0.3
191
Tumor
0.2
451
Tumor
0.2
965
Tumor
0.2
975
Tumor
0.2
815
Tumor
0.2
635
Tumor
0.2
881
Tumor
0.2
433
Tumor
0.2
113
Tumor
0.2
385
Tumor
0.2
187
Tumor
0.2
463
Tumor
0.2
865
Tumor
0.2
271
Tumor
0.2
883
Tumor
0.2
1045
Tumor
0.2
353
Tumor
0.2
867
Tumor
0.2
147
Tumor
0.2
913
Tumor
0.2
983
Tumor
0.2
421
Tumor
0.2
671
Tumor
0.2
491
Tumor
0.1
171
Tumor
0.1
921
Tumor
0.1
553
Tumor
0.1
211
Tumor
0.1
912
Normal
0.1
857
Tumor
0.1
145
Tumor
0.1
283
Tumor
0.1
423
Tumor
0.1
344
Normal
0.1
977
Tumor
0.1
487
Tumor
0.1
497
Tumor
0.1
415
Tumor
0.1
1015
Tumor
0.1
724
Normal
0.1
536
Normal
0.1
911
Tumor
0.1
517
Tumor
0.1
917
Tumor
0.1
352
Normal
0.1
742
Normal
0.1
223
Tumor
0.1
743
Tumor
0.1
232
Normal
0.1
813
Tumor
0.1
1042
Normal
0.0
954
Normal
0.0
478
Normal
0.0
513
Tumor
0.0
498
Normal
0.0
1031
Tumor
0.0
524
Normal
0.0
1043
Tumor
0.0
358
Normal
0.0
916
Normal
0.0
434
Normal
0.0
444
Normal
0.0
918
Normal
0.0
873
Tumor
0.0
721
Tumor
0.0
393
Tumor
0.0
924
Normal
0.0
342
Normal
0.0
261
Tumor
0.0
262
Normal
0.0
727
Tumor
0.0
481
Tumor
0.0
926
Normal
0.0
465
Tumor
0.0
563
Tumor
0.0
1046
Normal
0.0
1022
Normal
0.0
1032
Normal
0.0
713
Tumor
0.0
723
Tumor
0.0
354
Normal
0.0
914
Normal
0.0
984
Normal
0.0
744
Normal
0.0
366
Normal
0.0
368
Normal
0.0
213
Tumor
0.0
494
Normal
0.0
224
Normal
0.0
384
Normal
0.0
277
Tumor
0.0
955
Tumor
0.0
362
Normal
0.0
411
Tumor
0.0
488
Normal
0.0
161
Tumor
0.0
814
Normal
0.0
1044
Normal
0.0
126
Normal
0.0
978
Normal
0.0
716
Normal
0.0
492
Normal
0.0
1014
Normal
0.0
313
Tumor
0.0
958
Normal
0.0
361
Tumor
0.0
882
Normal
0.0
484
Normal
0.0
535
Tumor
-0.1
884
Normal
-0.1
922
Normal
-0.1
413
Tumor
-0.1
863
Tumor
-0.1
944
Normal
-0.1
728
Normal
-0.1
858
Normal
-0.1
258
Normal
-0.1
446
Normal
-0.1
714
Normal
-0.1
124
Normal
-0.1
573
Tumor
-0.1
686
Normal
-0.1
554
Normal
-0.1
1028
Normal
-0.1
966
Normal
-0.1
538
Normal
-0.1
125
Tumor
-0.1
852
Normal
-0.1
636
Normal
-0.1
436
Normal
-0.1
432
Normal
-0.1
785
Tumor
-0.1
952
Normal
-0.1
217
Tumor
-0.1
568
Normal
-0.1
297
Tumor
-0.1
756
Normal
-0.1
268
Normal
-0.1
383
Tumor
-0.1
981
Tumor
-0.1
1026
Normal
-0.1
141
Tumor
-0.1
431
Tumor
-0.1
515
Tumor
-0.1
923
Tumor
-0.1
957
Tumor
-0.1
284
Normal
-0.1
146
Normal
-0.1
964
Normal
-0.1
1013
Tumor
-0.1
1016
Normal
-0.1
546
Normal
-0.1
738
Normal
-0.1
162
Normal
-0.1
493
Tumor
-0.1
448
Normal
-0.1
572
Normal
-0.1
698
Normal
-0.1
272
Normal
-0.1
376
Normal
-0.1
968
Normal
-0.1
1021
Tumor
-0.1
574
Normal
-0.1
474
Normal
-0.1
664
Normal
-0.1
114
Normal
-0.1
186
Normal
-0.1
357
Tumor
-0.1
468
Normal
-0.1
558
Normal
-0.1
976
Normal
-0.1
518
Normal
-0.1
312
Normal
-0.1
864
Normal
-0.1
455
Tumor
-0.1
696
Normal
-0.1
866
Normal
-0.1
148
Normal
-0.1
1027
Tumor
-0.1
142
Normal
-0.1
128
Normal
-0.1
818
Normal
-0.1
526
Normal
-0.1
192
Normal
-0.1
482
Normal
-0.1
188
Normal
-0.1
982
Normal
-0.1
514
Normal
-0.1
462
Normal
-0.1
672
Normal
-0.1
355
Tumor
-0.1
878
Normal
-0.1
172
Normal
-0.1
363
Tumor
-0.1
943
Tumor
-0.1
666
Normal
-0.1
331
Tumor
-0.1
516
Normal
-0.1
472
Normal
-0.1
662
Normal
-0.2
387
Tumor
-0.2
214
Normal
-0.2
365
Tumor
-0.2
956
Normal
-0.2
528
Normal
-0.2
816
Normal
-0.2
327
Tumor
-0.2
628
Normal
-0.2
392
Normal
-0.2
615
Tumor
-0.2
741
Tumor
-0.2
862
Normal
-0.2
722
Normal
-0.2
422
Normal
-0.2
824
Normal
-0.2
534
Normal
-0.2
286
Normal
-0.2
425
Tumor
-0.2
228
Normal
-0.2
136
Normal
-0.2
938
Normal
-0.2
212
Normal
-0.2
778
Normal
-0.2
222
Normal
-0.2
332
Normal
-0.2
111
Normal
-0.2
278
Normal
-0.2
298
Normal
-0.2
196
Normal
-0.2
571
Tumor
-0.2
695
Tumor
-0.2
132
Normal
-0.2
523
Tumor
-0.2
564
Normal
-0.2
386
Normal
-0.2
391
Tumor
-0.2
456
Normal
-0.2
786
Normal
-0.2
746
Normal
-0.2
195
Tumor
-0.2
461
Tumor
-0.2
388
Normal
-0.2
314
Normal
-0.2
414
Normal
-0.2
416
Normal
-0.2
616
Normal
-0.2
424
Normal
-0.2
428
Normal
-0.2
394
Normal
-0.2
364
Normal
-0.2
412
Normal
-0.2
755
Tumor
-0.2
396
Normal
-0.2
447
Tumor
-0.2
627
Tumor
-0.2
227
Tumor
-0.2
466
Normal
-0.2
874
Normal
-0.2
868
Normal
-0.2
426
Normal
-0.3
218
Normal
-0.3
527
Tumor
-0.3
642
Normal
-0.3
452
Normal
-0.3
356
Normal
-0.3
138
Normal
-0.3
648
Normal
-0.3
351
Tumor
-0.3
311
Tumor
-0.3
328
Normal
-0.3
737
Tumor
-0.3
137
Tumor
-0.3
464
Normal
-0.3
618
Normal
-0.3
953
Tumor
-0.3
661
Tumor
-0.4
395
Tumor
-0.4
647
Tumor
-0.4
777
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
