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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC22A1 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
96.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1052.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
692.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
591.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
587.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
584.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
568.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
547.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
546.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
538.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
535.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
505.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
504.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
494.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
490.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
479.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
477.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
471.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
458.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
452.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
447.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
445.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
434.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
431.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
431.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
428.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
427.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
411.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
410.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
403.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
397.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
397.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
373.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
334.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
330.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
314.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
310.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
307.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
306.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
300.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
299.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
293.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
291.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
290.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
274.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
271.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
257.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
249.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
249.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
248.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
241.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
239.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
238.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
234.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
229.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
228.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
222.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
220.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
218.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
217.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
216.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
207.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
206.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
206.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
192.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
190.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
189.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
183.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
176.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
172.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
156.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
156.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
156.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
156.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
154.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
152.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
152.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
151.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
150.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
149.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
146.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
145.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
144.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
141.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
134.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
132.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
132.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
130.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
129.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
122.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
119.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
119.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
116.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
115.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
110.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
108.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
107.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
107.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
104.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
104.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
101.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
100.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
100.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
95.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
94.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
92.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
92.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
92.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
92.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
89.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
88.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
88.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
87.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
86.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
86.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
85.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
85.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
84.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
83.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
81.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
80.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
73.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
71.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
68.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
67.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
66.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
66.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
63.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
62.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
62.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
60.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
60.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
56.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
55.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
54.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
53.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
52.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
52.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
51.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
50.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
50.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
49.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
49.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
48.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
45.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
44.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
44.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
43.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
41.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
39.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
39.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
37.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
37.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
36.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
35.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
35.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
32.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
31.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
29.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC22A1 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
109.8
Number of samples
231
Samples
Sample
Description
TPM
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2016.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1029.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
853.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
753.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
717.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
715.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
601.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
592.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
589.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
538.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
509.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
502.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
455.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
418.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
351.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
344.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
332.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
331.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
329.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
322.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
320.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
303.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
288.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
279.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
270.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
252.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
252.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
250.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
248.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
245.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
240.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
235.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
226.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
225.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
221.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
219.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
214.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
211.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
208.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
207.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
204.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
203.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
198.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
197.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
193.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
193.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
191.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
189.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
181.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
180.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
178.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
175.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
174.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
171.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
166.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
153.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
150.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
149.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
147.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
136.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
125.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
124.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
122.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
113.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
113.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
113.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
110.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
109.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
107.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
103.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
99.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
96.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
96.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
94.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
92.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
83.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
82.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
76.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
73.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
71.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
67.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
67.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
67.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
65.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
64.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
64.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
64.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
62.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
60.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
60.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
59.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
59.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
57.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
56.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
55.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
53.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
51.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
51.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
51.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
50.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
49.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
49.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
49.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
48.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
45.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
45.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
44.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
44.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
44.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
37.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
33.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1046
Normal
1.7
436
Normal
1.4
472
Normal
1.4
618
Normal
1.4
1016
Normal
1.4
922
Normal
1.4
648
Normal
1.4
128
Normal
1.3
518
Normal
1.3
484
Normal
1.3
824
Normal
1.3
414
Normal
1.3
664
Normal
1.2
258
Normal
1.2
222
Normal
1.2
388
Normal
1.2
723
Tumor
1.2
818
Normal
1.2
742
Normal
1.1
884
Normal
1.1
232
Normal
1.1
714
Normal
1.1
172
Normal
1.1
278
Normal
1.1
1032
Normal
1.1
982
Normal
1.1
462
Normal
1.1
432
Normal
1.1
162
Normal
1.1
482
Normal
1.1
424
Normal
1.1
968
Normal
1.1
858
Normal
1.1
862
Normal
1.1
918
Normal
1.1
428
Normal
1.1
868
Normal
1.1
964
Normal
1.1
1014
Normal
1.1
628
Normal
1.1
466
Normal
1.1
314
Normal
1.1
514
Normal
1.1
474
Normal
1.1
212
Normal
1.0
298
Normal
1.0
912
Normal
1.0
111
Normal
1.0
1022
Normal
1.0
488
Normal
1.0
534
Normal
1.0
882
Normal
1.0
394
Normal
1.0
286
Normal
1.0
426
Normal
1.0
874
Normal
1.0
616
Normal
0.9
342
Normal
0.9
365
Tumor
0.9
464
Normal
0.9
666
Normal
0.9
938
Normal
0.9
526
Normal
0.9
944
Normal
0.9
914
Normal
0.9
746
Normal
0.9
866
Normal
0.9
1026
Normal
0.9
353
Tumor
0.9
642
Normal
0.9
328
Normal
0.9
786
Normal
0.8
864
Normal
0.8
728
Normal
0.8
568
Normal
0.8
423
Tumor
0.8
142
Normal
0.8
867
Tumor
0.8
572
Normal
0.8
738
Normal
0.8
528
Normal
0.8
392
Normal
0.8
816
Normal
0.8
952
Normal
0.8
132
Normal
0.8
564
Normal
0.7
358
Normal
0.7
136
Normal
0.7
148
Normal
0.7
146
Normal
0.7
356
Normal
0.7
1045
Tumor
0.7
698
Normal
0.7
138
Normal
0.7
366
Normal
0.7
214
Normal
0.7
756
Normal
0.7
396
Normal
0.7
412
Normal
0.7
924
Normal
0.7
362
Normal
0.6
196
Normal
0.6
662
Normal
0.6
416
Normal
0.6
452
Normal
0.6
686
Normal
0.6
722
Normal
0.6
636
Normal
0.6
1042
Normal
0.6
422
Normal
0.5
456
Normal
0.5
574
Normal
0.5
114
Normal
0.5
976
Normal
0.5
262
Normal
0.5
448
Normal
0.5
696
Normal
0.5
978
Normal
0.5
332
Normal
0.5
376
Normal
0.5
515
Tumor
0.5
446
Normal
0.5
926
Normal
0.5
312
Normal
0.5
546
Normal
0.5
272
Normal
0.5
284
Normal
0.4
558
Normal
0.4
468
Normal
0.4
186
Normal
0.4
778
Normal
0.4
386
Normal
0.4
465
Tumor
0.3
267
Tumor
0.3
368
Normal
0.3
1028
Normal
0.3
627
Tumor
0.3
228
Normal
0.3
955
Tumor
0.3
364
Normal
0.3
956
Normal
0.3
494
Normal
0.3
954
Normal
0.3
218
Normal
0.3
516
Normal
0.2
777
Tumor
0.2
744
Normal
0.2
878
Normal
0.2
615
Tumor
0.2
958
Normal
0.2
481
Tumor
0.2
344
Normal
0.1
966
Normal
0.1
916
Normal
0.1
461
Tumor
0.1
126
Normal
0.1
224
Normal
0.1
352
Normal
0.1
327
Tumor
0.1
354
Normal
0.0
984
Normal
0.0
124
Normal
0.0
716
Normal
0.0
852
Normal
0.0
554
Normal
-0.1
145
Tumor
-0.1
663
Tumor
-0.1
873
Tumor
-0.2
188
Normal
-0.2
492
Normal
-0.2
672
Normal
-0.2
192
Normal
-0.2
478
Normal
-0.2
141
Tumor
-0.3
268
Normal
-0.3
513
Tumor
-0.3
1044
Normal
-0.3
444
Normal
-0.3
384
Normal
-0.4
137
Tumor
-0.4
524
Normal
-0.4
915
Tumor
-0.5
434
Normal
-0.5
415
Tumor
-0.5
861
Tumor
-0.6
217
Tumor
-0.6
865
Tumor
-0.7
913
Tumor
-0.7
823
Tumor
-0.8
785
Tumor
-0.8
361
Tumor
-0.8
857
Tumor
-0.9
538
Normal
-0.9
721
Tumor
-0.9
498
Normal
-1.0
536
Normal
-1.0
421
Tumor
-1.0
357
Tumor
-1.0
981
Tumor
-1.1
527
Tumor
-1.1
445
Tumor
-1.1
814
Normal
-1.2
517
Tumor
-1.2
647
Tumor
-1.3
425
Tumor
-1.3
195
Tumor
-1.3
413
Tumor
-1.3
451
Tumor
-1.3
737
Tumor
-1.3
483
Tumor
-1.3
617
Tumor
-1.3
191
Tumor
-1.4
455
Tumor
-1.4
937
Tumor
-1.4
391
Tumor
-1.4
1015
Tumor
-1.4
261
Tumor
-1.4
863
Tumor
-1.4
563
Tumor
-1.4
491
Tumor
-1.5
297
Tumor
-1.5
533
Tumor
-1.5
755
Tumor
-1.5
477
Tumor
-1.5
713
Tumor
-1.5
185
Tumor
-1.5
917
Tumor
-1.5
367
Tumor
-1.6
473
Tumor
-1.6
487
Tumor
-1.6
341
Tumor
-1.6
112
Tumor
-1.6
135
Tumor
-1.6
113
Tumor
-1.6
813
Tumor
-1.6
187
Tumor
-1.6
355
Tumor
-1.7
463
Tumor
-1.7
393
Tumor
-1.7
387
Tumor
-1.7
493
Tumor
-1.7
231
Tumor
-1.7
671
Tumor
-1.7
881
Tumor
-1.7
911
Tumor
-1.7
257
Tumor
-1.7
665
Tumor
-1.7
271
Tumor
-1.7
427
Tumor
-1.8
127
Tumor
-1.8
277
Tumor
-1.8
943
Tumor
-1.8
523
Tumor
-1.8
375
Tumor
-1.8
343
Tumor
-1.8
977
Tumor
-1.8
963
Tumor
-1.8
525
Tumor
-1.8
395
Tumor
-1.8
433
Tumor
-1.9
471
Tumor
-1.9
131
Tumor
-1.9
223
Tumor
-1.9
1043
Tumor
-1.9
571
Tumor
-1.9
467
Tumor
-1.9
925
Tumor
-1.9
411
Tumor
-1.9
741
Tumor
-1.9
883
Tumor
-1.9
953
Tumor
-2.0
125
Tumor
-2.0
745
Tumor
-2.0
385
Tumor
-2.0
724
Normal
-2.0
383
Tumor
-2.0
695
Tumor
-2.0
213
Tumor
-2.1
641
Tumor
-2.1
967
Tumor
-2.1
221
Tumor
-2.1
661
Tumor
-2.1
1013
Tumor
-2.1
851
Tumor
-2.1
975
Tumor
-2.1
161
Tumor
-2.1
815
Tumor
-2.1
817
Tumor
-2.1
447
Tumor
-2.2
431
Tumor
-2.2
363
Tumor
-2.2
443
Tumor
-2.2
573
Tumor
-2.3
351
Tumor
-2.3
557
Tumor
-2.3
331
Tumor
-2.3
211
Tumor
-2.3
877
Tumor
-2.3
227
Tumor
-2.3
123
Tumor
-2.3
497
Tumor
-2.4
635
Tumor
-2.4
697
Tumor
-2.4
1041
Tumor
-2.4
285
Tumor
-2.4
567
Tumor
-2.4
311
Tumor
-2.4
147
Tumor
-2.4
283
Tumor
-2.5
965
Tumor
-2.5
1025
Tumor
-2.5
553
Tumor
-2.5
951
Tumor
-2.5
685
Tumor
-2.5
545
Tumor
-2.5
743
Tumor
-2.5
313
Tumor
-2.5
171
Tumor
-2.6
715
Tumor
-2.6
727
Tumor
-2.6
537
Tumor
-2.6
921
Tumor
-2.6
1031
Tumor
-2.7
983
Tumor
-2.7
435
Tumor
-2.7
923
Tumor
-2.8
1027
Tumor
-2.8
957
Tumor
-3.0
1021
Tumor
-3.2
535
Tumor
-3.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.