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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RSRC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RSRC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
1.1
965
Tumor
1.0
967
Tumor
0.8
647
Tumor
0.8
131
Tumor
0.8
921
Tumor
0.8
355
Tumor
0.8
743
Tumor
0.7
923
Tumor
0.7
865
Tumor
0.7
957
Tumor
0.7
473
Tumor
0.7
1021
Tumor
0.6
721
Tumor
0.6
817
Tumor
0.6
727
Tumor
0.6
277
Tumor
0.6
467
Tumor
0.6
411
Tumor
0.6
351
Tumor
0.5
863
Tumor
0.5
553
Tumor
0.5
777
Tumor
0.5
517
Tumor
0.5
443
Tumor
0.5
715
Tumor
0.5
823
Tumor
0.5
975
Tumor
0.5
161
Tumor
0.5
695
Tumor
0.5
983
Tumor
0.5
487
Tumor
0.5
755
Tumor
0.5
341
Tumor
0.5
953
Tumor
0.4
1031
Tumor
0.4
331
Tumor
0.4
937
Tumor
0.4
685
Tumor
0.4
785
Tumor
0.4
221
Tumor
0.4
477
Tumor
0.4
533
Tumor
0.4
963
Tumor
0.4
535
Tumor
0.4
737
Tumor
0.4
523
Tumor
0.4
1041
Tumor
0.4
881
Tumor
0.4
545
Tumor
0.4
661
Tumor
0.4
431
Tumor
0.4
525
Tumor
0.4
483
Tumor
0.4
915
Tumor
0.3
536
Normal
0.3
724
Normal
0.3
877
Tumor
0.3
943
Tumor
0.3
814
Normal
0.3
112
Tumor
0.3
375
Tumor
0.3
641
Tumor
0.3
363
Tumor
0.3
463
Tumor
0.3
497
Tumor
0.3
515
Tumor
0.3
297
Tumor
0.3
813
Tumor
0.3
883
Tumor
0.3
571
Tumor
0.3
617
Tumor
0.3
451
Tumor
0.3
1013
Tumor
0.3
465
Tumor
0.3
663
Tumor
0.3
537
Tumor
0.3
357
Tumor
0.3
958
Normal
0.3
415
Tumor
0.2
271
Tumor
0.2
471
Tumor
0.2
455
Tumor
0.2
524
Normal
0.2
327
Tumor
0.2
977
Tumor
0.2
867
Tumor
0.2
171
Tumor
0.2
665
Tumor
0.2
267
Tumor
0.2
222
Normal
0.2
1025
Tumor
0.2
435
Tumor
0.2
917
Tumor
0.2
447
Tumor
0.2
395
Tumor
0.2
851
Tumor
0.2
557
Tumor
0.2
367
Tumor
0.2
714
Normal
0.2
716
Normal
0.2
671
Tumor
0.2
873
Tumor
0.1
686
Normal
0.1
756
Normal
0.1
445
Tumor
0.1
954
Normal
0.1
696
Normal
0.1
185
Tumor
0.1
123
Tumor
0.1
513
Tumor
0.1
926
Normal
0.1
573
Tumor
0.1
461
Tumor
0.1
113
Tumor
0.1
913
Tumor
0.1
966
Normal
0.1
968
Normal
0.1
713
Tumor
0.1
217
Tumor
0.1
213
Tumor
0.1
861
Tumor
0.1
984
Normal
0.1
1043
Tumor
0.1
741
Tumor
0.1
218
Normal
0.1
391
Tumor
0.1
786
Normal
0.1
1014
Normal
0.1
1015
Tumor
0.1
978
Normal
0.1
744
Normal
0.1
488
Normal
0.1
635
Tumor
0.1
332
Normal
0.1
922
Normal
0.1
484
Normal
0.1
672
Normal
0.1
567
Tumor
0.1
278
Normal
0.1
481
Tumor
0.1
493
Tumor
0.1
393
Tumor
0.0
135
Tumor
0.0
722
Normal
0.0
546
Normal
0.0
261
Tumor
0.0
955
Tumor
0.0
742
Normal
0.0
444
Normal
0.0
857
Tumor
0.0
227
Tumor
0.0
196
Normal
0.0
964
Normal
0.0
365
Tumor
0.0
141
Tumor
0.0
976
Normal
0.0
1032
Normal
0.0
494
Normal
0.0
527
Tumor
0.0
433
Tumor
0.0
472
Normal
0.0
462
Normal
0.0
1045
Tumor
0.0
383
Tumor
0.0
627
Tumor
0.0
1016
Normal
0.0
925
Tumor
0.0
262
Normal
0.0
723
Tumor
0.0
911
Tumor
0.0
211
Tumor
0.0
311
Tumor
0.0
698
Normal
0.0
563
Tumor
0.0
938
Normal
0.0
516
Normal
0.0
385
Tumor
0.0
312
Normal
0.0
257
Tumor
0.0
815
Tumor
0.0
952
Normal
0.0
498
Normal
0.0
492
Normal
0.0
738
Normal
0.0
778
Normal
0.0
353
Tumor
0.0
1042
Normal
0.0
664
Normal
0.0
231
Tumor
0.0
328
Normal
0.0
918
Normal
0.0
162
Normal
0.0
358
Normal
0.0
172
Normal
0.0
554
Normal
0.0
1046
Normal
0.0
518
Normal
0.0
1022
Normal
0.0
526
Normal
0.0
368
Normal
0.0
313
Tumor
0.0
1027
Tumor
0.0
474
Normal
0.0
982
Normal
0.0
728
Normal
0.0
538
Normal
0.0
284
Normal
0.0
448
Normal
0.0
478
Normal
0.0
912
Normal
-0.1
416
Normal
-0.1
746
Normal
-0.1
697
Tumor
-0.1
944
Normal
-0.1
224
Normal
-0.1
286
Normal
-0.1
361
Tumor
-0.1
878
Normal
-0.1
354
Normal
-0.1
191
Tumor
-0.1
916
Normal
-0.1
187
Tumor
-0.1
186
Normal
-0.1
534
Normal
-0.1
436
Normal
-0.1
924
Normal
-0.1
482
Normal
-0.1
528
Normal
-0.1
824
Normal
-0.1
228
Normal
-0.1
956
Normal
-0.1
662
Normal
-0.1
283
Tumor
-0.1
366
Normal
-0.1
882
Normal
-0.1
268
Normal
-0.1
258
Normal
-0.1
188
Normal
-0.1
858
Normal
-0.1
298
Normal
-0.1
514
Normal
-0.1
648
Normal
-0.1
1028
Normal
-0.1
352
Normal
-0.1
1044
Normal
-0.1
884
Normal
-0.1
212
Normal
-0.1
412
Normal
-0.1
364
Normal
-0.1
142
Normal
-0.1
343
Tumor
-0.1
147
Tumor
-0.1
446
Normal
-0.1
314
Normal
-0.1
636
Normal
-0.1
1026
Normal
-0.1
148
Normal
-0.1
223
Tumor
-0.1
852
Normal
-0.1
491
Tumor
-0.1
342
Normal
-0.2
344
Normal
-0.2
874
Normal
-0.2
137
Tumor
-0.2
574
Normal
-0.2
285
Tumor
-0.2
981
Tumor
-0.2
914
Normal
-0.2
376
Normal
-0.2
434
Normal
-0.2
862
Normal
-0.2
387
Tumor
-0.2
568
Normal
-0.2
558
Normal
-0.2
615
Tumor
-0.2
642
Normal
-0.2
214
Normal
-0.2
127
Tumor
-0.2
572
Normal
-0.2
132
Normal
-0.2
818
Normal
-0.2
145
Tumor
-0.2
866
Normal
-0.2
396
Normal
-0.2
146
Normal
-0.2
192
Normal
-0.2
564
Normal
-0.2
356
Normal
-0.2
138
Normal
-0.2
666
Normal
-0.2
628
Normal
-0.2
384
Normal
-0.2
618
Normal
-0.2
136
Normal
-0.3
745
Tumor
-0.3
432
Normal
-0.3
456
Normal
-0.3
464
Normal
-0.3
616
Normal
-0.3
864
Normal
-0.3
125
Tumor
-0.3
195
Tumor
-0.3
362
Normal
-0.3
868
Normal
-0.3
272
Normal
-0.3
388
Normal
-0.3
386
Normal
-0.3
816
Normal
-0.3
392
Normal
-0.4
466
Normal
-0.4
468
Normal
-0.4
126
Normal
-0.4
232
Normal
-0.4
452
Normal
-0.4
394
Normal
-0.4
128
Normal
-0.5
114
Normal
-0.5
111
Normal
-0.6
124
Normal
-0.6
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
