MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.8 nTPM
HPA Brain:32.2 nTPM
GTEx:35.8 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:32.1 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.1
2828 Female, age 72, unknown 36.7
2586 Male, age 75, left hemisphere 35.7
2019 Male, age 18, unknown 34.0
1870 Female, age 42, unknown 32.8
2411 Female, age 72, unknown 28.5
1830 Male, age 51, unknown 28.4
1833 Male, age 53, unknown 28.1
1827 Male, age 72, unknown 27.9
2219 Male, age 76, both hemispheres 24.9
2666 Male, age 74, left hemisphere 24.2
Dorsal raphe nucleus
nTPM: 31.6
2298 Female, age 72, unknown 37.7
2750 Male, age 76, both hemispheres 32.3
2016 Female, age 72, unknown 31.2
2047 Male, age 72, unknown 29.0
1828 Male, age 53, unknown 27.6
Inferior colliculus
nTPM: 25.6
2097 Female, age 72, unknown 28.7
1890 Male, age 53, unknown 26.3
1848 Female, age 42, unknown 24.2
2849 Male, age 72, unknown 23.2
Median raphe nucleus
nTPM: 25.2
2220 Male, age 76, midline 25.2
Periaquaductal grey, anterior
nTPM: 28.0
1795 Male, age 51, unknown 29.2
2502 Female, age 75, unknown 28.8
1947 Male, age 18, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 26.4
2850 Male, age 76, both hemispheres 32.6
2464 Female, age 72, unknown 26.3
1831 Male, age 72, unknown 23.6
1840 Male, age 53, unknown 22.8
Periaquaductal grey, lateral
nTPM: 30.9
2272 Male, age 74, both hemispheres 32.4
2140 Male, age 76, both hemispheres 31.2
2053 Male, age 18, unknown 29.0
Pretectal area
nTPM: 28.0
2273 Male, age 74, both hemispheres 37.2
2667 Female, age 75, unknown 30.6
1815 Male, age 53, unknown 29.4
2224 Female, age 72, unknown 28.9
1817 Female, age 42, unknown 28.4
2007 Male, age 72, unknown 27.4
2316 Male, age 76, right hemisphere 27.3
1816 Male, age 51, unknown 25.7
1944 Female, age 72, unknown 25.6
2825 Male, age 18, unknown 24.0
2407 Male, age 75, both hemispheres 23.5
Red nucleus
nTPM: 32.2
2769 Male, age 72, unknown 38.3
1865 Male, age 51, unknown 35.5
2227 Male, age 72, unknown 35.5
1904 Male, age 53, unknown 34.8
2785 Male, age 18, unknown 34.8
2823 Male, age 76, right hemisphere 33.3
1954 Female, age 42, unknown 32.6
2503 Female, age 72, unknown 32.0
1821 Female, age 72, unknown 31.9
2725 Female, age 75, unknown 28.1
2584 Male, age 75, left hemisphere 26.9
2588 Male, age 74, left hemisphere 23.3
Substantia nigra
nTPM: 23.4
2583 Male, age 75, right hemisphere 27.9
1916 Female, age 42, unknown 27.5
1851 Male, age 51, unknown 25.7
2590 Female, age 75, unknown 25.2
1889 Female, age 72, unknown 24.9
2699 Male, age 18, unknown 24.8
1941 Male, age 53, unknown 21.9
2665 Male, age 74, both hemispheres 20.8
2241 Male, age 72, unknown 19.0
2409 Female, age 72, unknown 16.5
Superior colliculus
nTPM: 28.7
1995 Male, age 72, unknown 36.8
1913 Female, age 42, unknown 34.4
1796 Male, age 53, unknown 32.5
2587 Male, age 74, left hemisphere 29.0
2261 Male, age 18, unknown 28.4
2668 Female, age 75, unknown 26.2
2664 Male, age 75, both hemispheres 26.0
1839 Male, age 51, unknown 25.6
2087 Female, age 72, unknown 25.0
1895 Male, age 76, right hemisphere 23.1
Ventral tegmental area
nTPM: 28.0
2021 Male, age 53, unknown 30.1
2223 Female, age 72, unknown 28.7
2410 Female, age 72, unknown 28.2
1942 Male, age 51, unknown 27.3
1915 Female, age 42, unknown 26.9
2218 Male, age 76, both hemispheres 26.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.8
Samples: 139

Max nTPM: 70.9
Min nTPM: 16.3
Std nTPM: 9.8
Median nTPM: 34.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 70.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 66.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 65.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 61.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 58.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 57.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 55.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 54.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 54.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 51.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 51.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.8
FF:10158-103A5 76 years, female 34.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.0
Samples: 4

Max nTPM: 35.6
Min nTPM: 24.8
Sample A Female 29.4
Sample B Female 24.8
Sample C Male 30.3
Sample D Male 35.6
Midbrain
nTPM: 27.9
Samples: 4

Max nTPM: 43.9
Min nTPM: 19.2
Sample A Female 43.9
Sample B Female 28.7
Sample C Male 19.2
Sample D Male 19.8
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 26.3
Min nTPM: 23.5
Sample B Female 24.4
Sample C Male 26.3
Sample D Male 23.5
Superior colliculi
nTPM: 29.3
Samples: 4

Max nTPM: 31.0
Min nTPM: 26.8
Sample A Female 31.0
Sample B Female 26.8
Sample C Male 28.4
Sample D Male 30.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.1
Samples: 4

Max nTPM: 37.9
Min nTPM: 28.3
Sample A Male 32.7
Sample B Male 28.3
Sample C Female 29.3
Sample D Female 37.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
71616832 Antisense, RP_050927_02_H03, Mouse strain C57BL/6J (56 days, male) 0.8

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