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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:456.4 nTPM
GTEx:456.4 nTPM
FANTOM5:108.0 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

456.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 456.4
Samples: 105

Max nTPM: 736.6
Min nTPM: 256.1
Std nTPM: 102.2
Median nTPM:
218_1 71 years, female 736.6
321_1 62 years, female 731.8
452_1 88 years, female 704.8
353_1 82 years, female 647.9
379_1 60 years, male 631.1
351_1 91 years, male 605.6
322_1 76 years, male 601.3
320_1 89 years, female 599.5
319_1 81 years, male 598.8
355_1 70 years, female 594.8
377_1 82 years, female 586.8
386_1 76 years, male 582.1
354_1 81 years, female 577.8
177_1 74 years, male 571.6
447_1 81 years, male 561.7
163_1 78 years, male 561.5
349_1 83 years, male 560.8
376_1 75 years, female 554.3
352_1 62 years, male 549.3
347_1 72 years, male 541.9
384_1 83 years, male 529.6
243_1 75 years, male 527.6
41_1 94 years, female 523.2
295_1 61 years, female 517.2
4_1 88 years, female 515.8
506_1 65 years, male 515.1
172_1 72 years, female 511.0
350_1 84 years, female 510.8
356_1 87 years, female 510.2
389_1 86 years, female 509.5
317_1 60 years, male 505.1
173_1 67 years, male 502.7
404_1 82 years, female 502.1
99_1 64 years, male 500.4
6_1 73 years, female 500.1
375_1 74 years, female 494.9
237_1 82 years, male 494.2
318_1 68 years, male 493.5
316_1 62 years, male 489.5
348_1 84 years, male 488.7
17_1 71 years, male 488.4
335_1 73 years, female 485.6
145_1 84 years, male 485.1
396_1 62 years, male 483.7
394_1 75 years, female 480.9
2_1 77 years, female 480.5
120_1 70 years, female 477.3
526_1 61 years, male 472.9
246_1 77 years, male 470.6
406_1 79 years, male 470.6
425_1 59 years, female 470.3
254_1 77 years, female 468.4
286_1 68 years, female 464.3
137_1 83 years, male 464.1
265_1 87 years, male 464.0
189_1 76 years, male 459.3
264_1 73 years, female 453.5
480_1 63 years, male 447.9
293_1 68 years, female 446.2
35_1 74 years, female 445.9
153_1 70 years, female 440.5
229_1 69 years, female 438.0
311_1 78 years, male 436.2
405_1 91 years, male 435.2
251_1 78 years, male 434.5
292_1 71 years, male 432.6
115_1 83 years, male 432.3
503_1 68 years, male 424.4
307_1 66 years, female 420.9
291_1 76 years, male 414.8
518_1 75 years, female 413.9
517_1 88 years, male 407.3
314_1 67 years, male 407.1
266_1 85 years, male 393.8
109_1 81 years, female 392.8
18_1 88 years, male 392.1
126_1 63 years, male 389.4
324_1 76 years, male 389.0
139_1 64 years, female 383.8
119_1 70 years, female 380.8
288_1 66 years, female 370.2
468_1 89 years, male 369.8
315_1 62 years, female 369.7
117_1 61 years, male 362.1
217_1 76 years, male 359.5
42_1 85 years, male 358.0
495_1 57 years, female 357.6
499_1 55 years, female 342.0
308_1 70 years, female 339.7
142_1 61 years, female 338.2
313_1 79 years, female 337.5
491_1 89 years, female 332.8
9_1 66 years, female 327.7
162_1 79 years, female 319.9
81_1 67 years, male 316.8
501_1 88 years, male 308.3
89_1 63 years, male 305.2
413_1 59 years, female 303.3
415_1 77 years, female 294.8
32_1 67 years, male 290.7
149_1 88 years, male 279.8
43_1 64 years, female 274.0
414_1 84 years, female 264.0
466_1 57 years, female 262.7
490_1 67 years, female 256.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

108.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 108.0
FF:10030-101E3 24-65 years, mixed 108.0

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