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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PODN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
54.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
33.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PODN is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.4
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
68.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
672
Normal
1.6
444
Normal
1.4
192
Normal
1.3
354
Normal
1.3
536
Normal
1.3
958
Normal
1.2
185
Tumor
1.2
224
Normal
1.2
516
Normal
1.1
922
Normal
1.1
268
Normal
1.1
478
Normal
1.0
881
Tumor
1.0
355
Tumor
1.0
311
Tumor
1.0
188
Normal
1.0
386
Normal
1.0
421
Tumor
0.9
455
Tumor
0.9
671
Tumor
0.9
126
Normal
0.9
223
Tumor
0.9
384
Normal
0.9
1044
Normal
0.8
818
Normal
0.8
742
Normal
0.8
572
Normal
0.8
394
Normal
0.8
817
Tumor
0.8
563
Tumor
0.8
297
Tumor
0.8
917
Tumor
0.8
524
Normal
0.8
474
Normal
0.8
852
Normal
0.7
545
Tumor
0.7
388
Normal
0.7
284
Normal
0.7
146
Normal
0.7
574
Normal
0.7
744
Normal
0.7
982
Normal
0.7
857
Tumor
0.7
364
Normal
0.7
312
Normal
0.7
415
Tumor
0.6
434
Normal
0.6
214
Normal
0.6
943
Tumor
0.6
976
Normal
0.6
448
Normal
0.6
916
Normal
0.6
352
Normal
0.6
874
Normal
0.6
968
Normal
0.6
392
Normal
0.6
823
Tumor
0.6
1032
Normal
0.6
716
Normal
0.5
882
Normal
0.5
383
Tumor
0.5
662
Normal
0.5
558
Normal
0.5
492
Normal
0.5
984
Normal
0.5
187
Tumor
0.5
785
Tumor
0.5
816
Normal
0.5
498
Normal
0.5
664
Normal
0.4
1028
Normal
0.4
186
Normal
0.4
666
Normal
0.4
342
Normal
0.4
314
Normal
0.4
138
Normal
0.4
422
Normal
0.4
862
Normal
0.4
332
Normal
0.4
412
Normal
0.4
218
Normal
0.4
148
Normal
0.4
228
Normal
0.4
956
Normal
0.4
814
Normal
0.4
298
Normal
0.3
975
Tumor
0.3
145
Tumor
0.3
375
Tumor
0.3
697
Tumor
0.3
213
Tumor
0.3
344
Normal
0.3
813
Tumor
0.3
368
Normal
0.3
786
Normal
0.3
924
Normal
0.3
1022
Normal
0.3
135
Tumor
0.3
738
Normal
0.3
414
Normal
0.3
366
Normal
0.3
141
Tumor
0.3
921
Tumor
0.3
538
Normal
0.3
964
Normal
0.3
472
Normal
0.3
461
Tumor
0.3
362
Normal
0.3
363
Tumor
0.3
884
Normal
0.3
124
Normal
0.3
137
Tumor
0.2
132
Normal
0.2
136
Normal
0.2
416
Normal
0.2
918
Normal
0.2
396
Normal
0.2
222
Normal
0.2
428
Normal
0.2
328
Normal
0.2
212
Normal
0.2
535
Tumor
0.2
278
Normal
0.2
426
Normal
0.2
172
Normal
0.2
162
Normal
0.2
878
Normal
0.2
196
Normal
0.2
424
Normal
0.2
954
Normal
0.2
277
Tumor
0.2
746
Normal
0.2
963
Tumor
0.1
514
Normal
0.1
723
Tumor
0.1
714
Normal
0.1
494
Normal
0.1
642
Normal
0.1
483
Tumor
0.1
385
Tumor
0.1
447
Tumor
0.1
433
Tumor
0.1
938
Normal
0.1
456
Normal
0.1
883
Tumor
0.1
698
Normal
0.1
1045
Tumor
0.1
866
Normal
0.1
525
Tumor
0.1
858
Normal
0.1
722
Normal
0.1
358
Normal
0.1
191
Tumor
0.1
618
Normal
0.0
331
Tumor
0.0
564
Normal
0.0
636
Normal
0.0
195
Tumor
0.0
114
Normal
0.0
696
Normal
0.0
944
Normal
0.0
515
Tumor
0.0
211
Tumor
0.0
466
Normal
0.0
926
Normal
0.0
628
Normal
0.0
262
Normal
0.0
686
Normal
0.0
641
Tumor
0.0
142
Normal
0.0
952
Normal
0.0
111
Normal
0.0
356
Normal
0.0
452
Normal
0.0
482
Normal
0.0
1026
Normal
0.0
161
Tumor
0.0
468
Normal
0.0
464
Normal
0.0
484
Normal
0.0
568
Normal
0.0
365
Tumor
0.0
528
Normal
0.0
1042
Normal
0.0
491
Tumor
-0.1
286
Normal
-0.1
462
Normal
-0.1
546
Normal
-0.1
864
Normal
-0.1
376
Normal
-0.1
1046
Normal
-0.1
446
Normal
-0.1
1016
Normal
-0.1
526
Normal
-0.1
912
Normal
-0.1
217
Tumor
-0.1
868
Normal
-0.1
488
Normal
-0.1
713
Tumor
-0.1
327
Tumor
-0.1
272
Normal
-0.1
978
Normal
-0.1
1014
Normal
-0.1
427
Tumor
-0.1
756
Normal
-0.1
128
Normal
-0.2
534
Normal
-0.2
232
Normal
-0.2
554
Normal
-0.2
616
Normal
-0.2
493
Tumor
-0.2
432
Normal
-0.2
343
Tumor
-0.2
728
Normal
-0.2
721
Tumor
-0.2
518
Normal
-0.2
914
Normal
-0.2
341
Tumor
-0.3
824
Normal
-0.3
877
Tumor
-0.3
423
Tumor
-0.3
353
Tumor
-0.3
966
Normal
-0.3
648
Normal
-0.3
436
Normal
-0.3
467
Tumor
-0.4
778
Normal
-0.4
463
Tumor
-0.4
923
Tumor
-0.4
283
Tumor
-0.4
361
Tumor
-0.4
221
Tumor
-0.4
413
Tumor
-0.4
471
Tumor
-0.4
395
Tumor
-0.5
425
Tumor
-0.5
387
Tumor
-0.5
867
Tumor
-0.5
863
Tumor
-0.5
313
Tumor
-0.6
715
Tumor
-0.6
527
Tumor
-0.6
391
Tumor
-0.6
227
Tumor
-0.7
497
Tumor
-0.7
258
Normal
-0.7
913
Tumor
-0.7
647
Tumor
-0.7
147
Tumor
-0.7
665
Tumor
-0.7
627
Tumor
-0.7
351
Tumor
-0.7
127
Tumor
-0.8
481
Tumor
-0.8
983
Tumor
-0.8
367
Tumor
-0.8
661
Tumor
-0.8
113
Tumor
-0.8
473
Tumor
-0.8
925
Tumor
-0.8
815
Tumor
-0.8
1015
Tumor
-0.8
1043
Tumor
-0.8
131
Tumor
-0.9
125
Tumor
-0.9
443
Tumor
-0.9
981
Tumor
-0.9
953
Tumor
-0.9
112
Tumor
-0.9
851
Tumor
-0.9
615
Tumor
-0.9
431
Tumor
-0.9
487
Tumor
-0.9
477
Tumor
-0.9
573
Tumor
-0.9
171
Tumor
-0.9
557
Tumor
-0.9
513
Tumor
-0.9
393
Tumor
-1.0
873
Tumor
-1.0
517
Tumor
-1.0
617
Tumor
-1.0
445
Tumor
-1.0
411
Tumor
-1.0
553
Tumor
-1.0
695
Tumor
-1.0
571
Tumor
-1.0
911
Tumor
-1.0
955
Tumor
-1.0
357
Tumor
-1.0
435
Tumor
-1.1
451
Tumor
-1.1
465
Tumor
-1.1
285
Tumor
-1.1
915
Tumor
-1.1
965
Tumor
-1.1
537
Tumor
-1.1
567
Tumor
-1.1
977
Tumor
-1.2
957
Tumor
-1.2
663
Tumor
-1.2
967
Tumor
-1.2
123
Tumor
-1.3
741
Tumor
-1.3
685
Tumor
-1.3
271
Tumor
-1.3
533
Tumor
-1.3
1027
Tumor
-1.3
861
Tumor
-1.3
261
Tumor
-1.4
777
Tumor
-1.4
1025
Tumor
-1.4
1013
Tumor
-1.4
737
Tumor
-1.4
727
Tumor
-1.5
231
Tumor
-1.5
724
Normal
-1.5
865
Tumor
-1.5
635
Tumor
-1.5
267
Tumor
-1.5
523
Tumor
-1.6
1031
Tumor
-1.6
1021
Tumor
-1.6
755
Tumor
-1.6
1041
Tumor
-1.7
937
Tumor
-1.7
743
Tumor
-1.7
257
Tumor
-1.7
745
Tumor
-1.8
951
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.