We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRMT10C is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.6
537
Tumor
1.4
1041
Tumor
1.3
925
Tumor
1.3
851
Tumor
1.3
227
Tumor
1.0
367
Tumor
1.0
363
Tumor
0.9
567
Tumor
0.9
911
Tumor
0.9
883
Tumor
0.8
411
Tumor
0.8
191
Tumor
0.8
473
Tumor
0.8
477
Tumor
0.8
557
Tumor
0.7
525
Tumor
0.7
695
Tumor
0.7
465
Tumor
0.7
513
Tumor
0.7
957
Tumor
0.7
535
Tumor
0.7
965
Tumor
0.7
145
Tumor
0.6
1013
Tumor
0.6
713
Tumor
0.6
127
Tumor
0.6
427
Tumor
0.6
951
Tumor
0.5
563
Tumor
0.5
483
Tumor
0.5
467
Tumor
0.5
393
Tumor
0.5
491
Tumor
0.5
123
Tumor
0.5
187
Tumor
0.4
361
Tumor
0.4
221
Tumor
0.4
627
Tumor
0.4
647
Tumor
0.4
113
Tumor
0.4
1025
Tumor
0.4
391
Tumor
0.4
745
Tumor
0.4
937
Tumor
0.4
983
Tumor
0.4
665
Tumor
0.4
285
Tumor
0.4
915
Tumor
0.4
523
Tumor
0.3
185
Tumor
0.3
327
Tumor
0.3
261
Tumor
0.3
257
Tumor
0.3
517
Tumor
0.3
873
Tumor
0.3
1027
Tumor
0.3
471
Tumor
0.3
727
Tumor
0.3
421
Tumor
0.3
135
Tumor
0.3
553
Tumor
0.3
1043
Tumor
0.3
461
Tumor
0.3
435
Tumor
0.3
351
Tumor
0.3
533
Tumor
0.3
141
Tumor
0.3
385
Tumor
0.3
231
Tumor
0.3
913
Tumor
0.3
615
Tumor
0.3
685
Tumor
0.3
125
Tumor
0.2
777
Tumor
0.2
131
Tumor
0.2
137
Tumor
0.2
313
Tumor
0.2
328
Normal
0.2
724
Normal
0.2
497
Tumor
0.2
921
Tumor
0.2
981
Tumor
0.2
573
Tumor
0.2
487
Tumor
0.1
171
Tumor
0.1
755
Tumor
0.1
443
Tumor
0.1
423
Tumor
0.1
1015
Tumor
0.1
741
Tumor
0.1
195
Tumor
0.1
112
Tumor
0.1
364
Normal
0.1
451
Tumor
0.1
416
Normal
0.1
462
Normal
0.1
786
Normal
0.1
365
Tumor
0.1
452
Normal
0.1
341
Tumor
0.1
267
Tumor
0.1
515
Tumor
0.1
128
Normal
0.1
868
Normal
0.1
696
Normal
0.1
715
Tumor
0.0
648
Normal
0.0
186
Normal
0.0
395
Tumor
0.0
172
Normal
0.0
746
Normal
0.0
663
Tumor
0.0
617
Tumor
0.0
1045
Tumor
0.0
356
Normal
0.0
114
Normal
0.0
923
Tumor
0.0
1016
Normal
0.0
161
Tumor
0.0
924
Normal
0.0
912
Normal
0.0
756
Normal
0.0
1021
Tumor
0.0
297
Tumor
0.0
428
Normal
0.0
218
Normal
0.0
874
Normal
0.0
1014
Normal
0.0
824
Normal
0.0
526
Normal
0.0
863
Tumor
0.0
518
Normal
0.0
474
Normal
0.0
858
Normal
0.0
1032
Normal
0.0
1046
Normal
0.0
882
Normal
0.0
955
Tumor
0.0
436
Normal
0.0
1031
Tumor
0.0
564
Normal
0.0
861
Tumor
-0.1
867
Tumor
-0.1
222
Normal
-0.1
568
Normal
-0.1
1026
Normal
-0.1
953
Tumor
-0.1
864
Normal
-0.1
148
Normal
-0.1
493
Tumor
-0.1
111
Normal
-0.1
482
Normal
-0.1
982
Normal
-0.1
132
Normal
-0.1
636
Normal
-0.1
214
Normal
-0.1
785
Tumor
-0.1
212
Normal
-0.1
952
Normal
-0.1
466
Normal
-0.1
422
Normal
-0.1
358
Normal
-0.1
862
Normal
-0.1
815
Tumor
-0.1
728
Normal
-0.1
217
Tumor
-0.1
162
Normal
-0.1
472
Normal
-0.1
977
Tumor
-0.1
136
Normal
-0.1
514
Normal
-0.1
424
Normal
-0.1
286
Normal
-0.1
616
Normal
-0.1
383
Tumor
-0.1
866
Normal
-0.1
228
Normal
-0.1
664
Normal
-0.1
742
Normal
-0.1
414
Normal
-0.1
262
Normal
-0.1
188
Normal
-0.1
481
Tumor
-0.1
213
Tumor
-0.1
415
Tumor
-0.1
964
Normal
-0.1
142
Normal
-0.1
412
Normal
-0.1
488
Normal
-0.1
528
Normal
-0.1
714
Normal
-0.1
484
Normal
-0.1
738
Normal
-0.1
126
Normal
-0.1
723
Tumor
-0.1
978
Normal
-0.1
778
Normal
-0.2
1042
Normal
-0.2
258
Normal
-0.2
857
Tumor
-0.2
571
Tumor
-0.2
884
Normal
-0.2
722
Normal
-0.2
852
Normal
-0.2
355
Tumor
-0.2
376
Normal
-0.2
534
Normal
-0.2
546
Normal
-0.2
963
Tumor
-0.2
432
Normal
-0.2
662
Normal
-0.2
494
Normal
-0.2
642
Normal
-0.2
938
Normal
-0.2
1028
Normal
-0.2
223
Tumor
-0.2
823
Tumor
-0.2
558
Normal
-0.2
516
Normal
-0.2
816
Normal
-0.2
232
Normal
-0.2
524
Normal
-0.2
354
Normal
-0.2
366
Normal
-0.2
124
Normal
-0.2
918
Normal
-0.2
431
Tumor
-0.2
426
Normal
-0.2
818
Normal
-0.2
666
Normal
-0.2
922
Normal
-0.2
572
Normal
-0.2
881
Tumor
-0.2
574
Normal
-0.2
448
Normal
-0.2
554
Normal
-0.2
492
Normal
-0.2
464
Normal
-0.2
368
Normal
-0.2
446
Normal
-0.2
331
Tumor
-0.2
968
Normal
-0.2
224
Normal
-0.2
916
Normal
-0.2
362
Normal
-0.2
698
Normal
-0.2
926
Normal
-0.2
413
Tumor
-0.2
138
Normal
-0.2
196
Normal
-0.2
314
Normal
-0.2
672
Normal
-0.2
1044
Normal
-0.2
468
Normal
-0.2
966
Normal
-0.2
146
Normal
-0.3
618
Normal
-0.3
976
Normal
-0.3
211
Tumor
-0.3
967
Tumor
-0.3
686
Normal
-0.3
984
Normal
-0.3
1022
Normal
-0.3
425
Tumor
-0.3
456
Normal
-0.3
914
Normal
-0.3
434
Normal
-0.3
192
Normal
-0.3
357
Tumor
-0.3
447
Tumor
-0.3
445
Tumor
-0.3
284
Normal
-0.3
878
Normal
-0.3
388
Normal
-0.3
956
Normal
-0.3
944
Normal
-0.3
298
Normal
-0.3
386
Normal
-0.3
545
Tumor
-0.3
278
Normal
-0.3
661
Tumor
-0.3
396
Normal
-0.3
394
Normal
-0.3
375
Tumor
-0.3
392
Normal
-0.3
353
Tumor
-0.3
344
Normal
-0.3
444
Normal
-0.3
813
Tumor
-0.3
147
Tumor
-0.3
628
Normal
-0.3
352
Normal
-0.3
958
Normal
-0.3
342
Normal
-0.3
478
Normal
-0.3
272
Normal
-0.3
433
Tumor
-0.3
268
Normal
-0.3
716
Normal
-0.4
943
Tumor
-0.4
271
Tumor
-0.4
743
Tumor
-0.4
455
Tumor
-0.4
463
Tumor
-0.4
332
Normal
-0.4
538
Normal
-0.4
954
Normal
-0.4
671
Tumor
-0.4
312
Normal
-0.4
641
Tumor
-0.4
277
Tumor
-0.4
737
Tumor
-0.4
498
Normal
-0.4
387
Tumor
-0.4
744
Normal
-0.4
877
Tumor
-0.4
697
Tumor
-0.4
814
Normal
-0.5
384
Normal
-0.5
536
Normal
-0.5
917
Tumor
-0.5
311
Tumor
-0.5
283
Tumor
-0.6
721
Tumor
-0.6
527
Tumor
-0.6
343
Tumor
-0.6
817
Tumor
-0.6
975
Tumor
-0.7
635
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
