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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD34 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
56.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
55.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
50.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
49.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
41.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
40.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
40.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
38.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
35.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
34.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
32.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
31.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
28.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD34 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
231
Samples
Sample
Description
TPM
DO50800
0 years, male, NA, stage:2, alive, 510 days
149.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
63.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
46.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
44.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
43.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
38.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
35.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
27.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.8
473
Tumor
1.7
981
Tumor
1.3
647
Tumor
1.3
1025
Tumor
1.3
627
Tumor
1.2
261
Tumor
1.2
977
Tumor
1.2
513
Tumor
1.1
937
Tumor
1.1
553
Tumor
1.1
615
Tumor
1.1
327
Tumor
1.1
1041
Tumor
1.1
471
Tumor
1.0
1013
Tumor
1.0
477
Tumor
1.0
1015
Tumor
1.0
923
Tumor
1.0
915
Tumor
1.0
1043
Tumor
0.9
483
Tumor
0.9
525
Tumor
0.9
957
Tumor
0.9
493
Tumor
0.9
745
Tumor
0.9
1031
Tumor
0.9
715
Tumor
0.9
823
Tumor
0.9
461
Tumor
0.9
1045
Tumor
0.8
227
Tumor
0.8
727
Tumor
0.8
141
Tumor
0.8
695
Tumor
0.8
863
Tumor
0.8
545
Tumor
0.8
857
Tumor
0.8
785
Tumor
0.8
777
Tumor
0.7
223
Tumor
0.7
975
Tumor
0.7
435
Tumor
0.7
557
Tumor
0.7
383
Tumor
0.7
213
Tumor
0.7
861
Tumor
0.6
851
Tumor
0.6
697
Tumor
0.6
755
Tumor
0.6
311
Tumor
0.6
363
Tumor
0.5
913
Tumor
0.5
277
Tumor
0.5
481
Tumor
0.5
817
Tumor
0.5
925
Tumor
0.5
497
Tumor
0.5
231
Tumor
0.5
641
Tumor
0.5
713
Tumor
0.5
492
Normal
0.5
353
Tumor
0.5
515
Tumor
0.5
685
Tumor
0.5
741
Tumor
0.5
361
Tumor
0.5
963
Tumor
0.5
313
Tumor
0.5
365
Tumor
0.5
137
Tumor
0.5
171
Tumor
0.4
447
Tumor
0.4
873
Tumor
0.4
533
Tumor
0.4
467
Tumor
0.4
911
Tumor
0.4
665
Tumor
0.4
423
Tumor
0.4
617
Tumor
0.4
384
Normal
0.4
433
Tumor
0.4
421
Tumor
0.4
221
Tumor
0.4
671
Tumor
0.4
123
Tumor
0.3
465
Tumor
0.3
967
Tumor
0.3
535
Tumor
0.3
211
Tumor
0.3
951
Tumor
0.3
192
Normal
0.3
367
Tumor
0.3
343
Tumor
0.3
431
Tumor
0.3
161
Tumor
0.3
297
Tumor
0.3
743
Tumor
0.3
491
Tumor
0.3
537
Tumor
0.3
185
Tumor
0.3
267
Tumor
0.3
867
Tumor
0.2
191
Tumor
0.2
546
Normal
0.2
921
Tumor
0.2
814
Normal
0.2
147
Tumor
0.2
1021
Tumor
0.2
415
Tumor
0.2
737
Tumor
0.2
341
Tumor
0.2
455
Tumor
0.2
444
Normal
0.2
916
Normal
0.2
395
Tumor
0.1
451
Tumor
0.1
1027
Tumor
0.1
982
Normal
0.1
943
Tumor
0.1
865
Tumor
0.1
113
Tumor
0.1
516
Normal
0.1
883
Tumor
0.1
411
Tumor
0.1
131
Tumor
0.1
917
Tumor
0.1
571
Tumor
0.1
445
Tumor
0.1
498
Normal
0.1
283
Tumor
0.1
1032
Normal
0.1
554
Normal
0.1
364
Normal
0.1
127
Tumor
0.0
357
Tumor
0.0
983
Tumor
0.0
721
Tumor
0.0
195
Tumor
0.0
724
Normal
0.0
881
Tumor
0.0
558
Normal
0.0
112
Tumor
0.0
536
Normal
0.0
813
Tumor
0.0
523
Tumor
0.0
487
Tumor
0.0
534
Normal
0.0
463
Tumor
0.0
517
Tumor
0.0
635
Tumor
0.0
538
Normal
0.0
135
Tumor
0.0
355
Tumor
0.0
877
Tumor
0.0
528
Normal
-0.1
413
Tumor
-0.1
878
Normal
-0.1
1022
Normal
-0.1
563
Tumor
-0.1
567
Tumor
-0.1
443
Tumor
-0.1
366
Normal
-0.1
918
Normal
-0.1
145
Tumor
-0.1
953
Tumor
-0.1
416
Normal
-0.1
284
Normal
-0.1
331
Tumor
-0.1
393
Tumor
-0.1
816
Normal
-0.1
572
Normal
-0.1
484
Normal
-0.2
375
Tumor
-0.2
271
Tumor
-0.2
527
Tumor
-0.2
526
Normal
-0.2
187
Tumor
-0.2
427
Tumor
-0.2
958
Normal
-0.2
356
Normal
-0.2
432
Normal
-0.2
1042
Normal
-0.2
412
Normal
-0.2
257
Tumor
-0.2
376
Normal
-0.2
882
Normal
-0.2
938
Normal
-0.2
924
Normal
-0.2
488
Normal
-0.2
815
Tumor
-0.2
472
Normal
-0.2
285
Tumor
-0.2
224
Normal
-0.2
912
Normal
-0.3
514
Normal
-0.3
368
Normal
-0.3
922
Normal
-0.3
478
Normal
-0.3
926
Normal
-0.3
268
Normal
-0.3
968
Normal
-0.3
573
Tumor
-0.3
574
Normal
-0.3
328
Normal
-0.3
1044
Normal
-0.3
312
Normal
-0.3
494
Normal
-0.4
386
Normal
-0.4
446
Normal
-0.4
518
Normal
-0.4
434
Normal
-0.4
387
Tumor
-0.4
228
Normal
-0.4
425
Tumor
-0.4
666
Normal
-0.4
188
Normal
-0.4
1046
Normal
-0.4
362
Normal
-0.4
716
Normal
-0.4
874
Normal
-0.4
744
Normal
-0.4
914
Normal
-0.4
448
Normal
-0.4
1026
Normal
-0.4
1028
Normal
-0.4
217
Tumor
-0.4
385
Tumor
-0.4
864
Normal
-0.4
661
Tumor
-0.4
351
Tumor
-0.5
125
Tumor
-0.5
524
Normal
-0.5
786
Normal
-0.5
956
Normal
-0.5
818
Normal
-0.5
663
Tumor
-0.5
984
Normal
-0.5
196
Normal
-0.5
436
Normal
-0.5
978
Normal
-0.5
866
Normal
-0.5
474
Normal
-0.5
354
Normal
-0.5
884
Normal
-0.5
618
Normal
-0.5
698
Normal
-0.5
714
Normal
-0.5
212
Normal
-0.5
278
Normal
-0.5
1016
Normal
-0.6
298
Normal
-0.6
858
Normal
-0.6
628
Normal
-0.6
852
Normal
-0.6
186
Normal
-0.6
272
Normal
-0.6
314
Normal
-0.6
696
Normal
-0.6
722
Normal
-0.6
462
Normal
-0.6
172
Normal
-0.6
976
Normal
-0.6
148
Normal
-0.6
1014
Normal
-0.6
954
Normal
-0.6
636
Normal
-0.6
146
Normal
-0.6
642
Normal
-0.6
862
Normal
-0.6
468
Normal
-0.6
391
Tumor
-0.7
944
Normal
-0.7
466
Normal
-0.7
332
Normal
-0.7
672
Normal
-0.7
258
Normal
-0.7
756
Normal
-0.7
456
Normal
-0.7
452
Normal
-0.7
952
Normal
-0.7
662
Normal
-0.7
686
Normal
-0.7
218
Normal
-0.7
964
Normal
-0.7
132
Normal
-0.7
564
Normal
-0.8
138
Normal
-0.8
464
Normal
-0.8
824
Normal
-0.8
162
Normal
-0.8
344
Normal
-0.8
262
Normal
-0.8
728
Normal
-0.8
142
Normal
-0.8
966
Normal
-0.8
616
Normal
-0.8
286
Normal
-0.9
232
Normal
-0.9
214
Normal
-0.9
568
Normal
-0.9
742
Normal
-0.9
114
Normal
-0.9
126
Normal
-0.9
648
Normal
-0.9
352
Normal
-0.9
358
Normal
-1.0
746
Normal
-1.0
392
Normal
-1.0
868
Normal
-1.0
124
Normal
-1.0
342
Normal
-1.0
778
Normal
-1.0
664
Normal
-1.1
723
Tumor
-1.1
222
Normal
-1.1
482
Normal
-1.1
111
Normal
-1.1
422
Normal
-1.1
955
Tumor
-1.1
128
Normal
-1.2
136
Normal
-1.2
738
Normal
-1.3
426
Normal
-1.4
424
Normal
-1.4
428
Normal
-1.5
414
Normal
-1.7
396
Normal
-1.7
394
Normal
-1.8
388
Normal
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
