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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
53.3
nTPM
HPA Brain:
22.3
nTPM
GTEx:
53.3
nTPM
FANTOM5:
66.7
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA043651
Antibody CAB032623
Glial cells
Not detected
Medium
Neuronal cells
Not detected
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 22.3
2529
Female, age 94, left hemisphere
25.2
1855
Male, age 76, left hemisphere
24.7
2621
Female, age 67, right hemisphere
24.2
1911
Female, age 85, right hemisphere
20.1
2148
Female, age 91, left hemisphere
20.0
1898
Male, age 80, left hemisphere
19.3
Dentate gyrus nTPM: 19.2
2246
Female, age 85, both hemispheres
24.6
2010
Male, age 76, both hemispheres
24.1
2530
Female, age 94, left hemisphere
19.0
2531
Female, age 67, both hemispheres
16.3
2528
Male, age 74, both hemispheres
16.2
1927
Female, age 91, both hemispheres
14.8
Entorhinal gyrus nTPM: 16.8
2117
Female, age 91, right hemisphere
22.6
1787
Male, age 76, left hemisphere
20.7
1938
Female, age 85, left hemisphere
18.1
2686
Male, age 75, right hemisphere
16.7
2764
Male, age 80, right hemisphere
12.3
2613
Female, age 94, left hemisphere
10.6
Hippocampus, CA1 nTPM: 19.2
2045
Male, age 76, both hemispheres
24.2
2527
Male, age 74, both hemispheres
23.8
1873
Female, age 85, both hemispheres
18.8
2082
Female, age 91, right hemisphere
18.0
2749
Male, age 80, left hemisphere
11.2
Hippocampus, CA2 nTPM: 19.8
1940
Female, age 85, left hemisphere
26.2
2249
Male, age 74, both hemispheres
22.8
2437
Female, age 94, left hemisphere
21.0
1892
Male, age 76, both hemispheres
18.5
2113
Female, age 91, right hemisphere
18.3
1963
Male, age 80, left hemisphere
11.7
Hippocampus, CA3 nTPM: 19.6
2436
Male, age 74, both hemispheres
28.0
1867
Male, age 76, both hemispheres
24.5
1891
Female, age 85, both hemispheres
18.1
2861
Female, age 67, both hemispheres
17.1
2137
Male, age 80, left hemisphere
15.6
2620
Female, age 94, left hemisphere
14.5
Parahippocampal cortex nTPM: 19.1
2018
Male, age 76, both hemispheres
24.8
2532
Female, age 72, left hemisphere
22.4
2250
Female, age 67, right hemisphere
22.2
2245
Female, age 91, both hemispheres
21.4
2692
Male, age 74, both hemispheres
18.7
1933
Female, age 85, both hemispheres
18.0
2622
Female, age 67, right hemisphere
16.9
1990
Female, age 91, right hemisphere
16.0
1850
Male, age 80, both hemispheres
15.7
2693
Female, age 94, both hemispheres
14.6
Perirhinal gyrus nTPM: 16.2
1841
Female, age 85, right hemisphere
17.7
2521
Female, age 94, right hemisphere
17.3
1794
Male, age 80, right hemisphere
16.1
1847
Female, age 91, left hemisphere
15.0
2848
Male, age 76, right hemisphere
14.9
Subiculum nTPM: 20.3
2042
Male, age 76, both hemispheres
26.8
2438
Female, age 94, left hemisphere
22.4
2619
Male, age 74, both hemispheres
21.5
1901
Male, age 80, both hemispheres
18.1
2729
Female, age 91, right hemisphere
17.0
1977
Female, age 85, both hemispheres
16.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
53.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 53.3
Samples: 197
Max nTPM: 166.3
Min nTPM: 20.0
Std nTPM: 21.3
Median nTPM: 49.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
166.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
128.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
126.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
125.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
119.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
110.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
97.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
96.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
93.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
88.9
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
85.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
84.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
83.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
83.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
82.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
81.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
81.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
80.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
79.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
78.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
78.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
77.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
76.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
74.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
74.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
74.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
74.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
74.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
73.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
73.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
72.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
71.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
70.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
68.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
68.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
68.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
68.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
67.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
67.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
67.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
66.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
66.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
66.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
65.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
65.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
64.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
64.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
64.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
64.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
63.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
63.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
63.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
63.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
63.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
63.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
62.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
62.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
62.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
61.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
61.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
60.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
59.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
58.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
58.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
58.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
57.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
57.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
56.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
56.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
56.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
56.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
55.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
55.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
55.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
54.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
54.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
54.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
54.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
54.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
54.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
54.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
53.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
53.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
53.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
53.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
52.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
52.3
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
51.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
51.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
50.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
50.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
50.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
49.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
49.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
49.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
49.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
49.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
49.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
49.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
49.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
48.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
48.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
48.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
48.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
48.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
48.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
47.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
46.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
46.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
46.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
46.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
46.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
45.6
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
45.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
45.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
45.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
44.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
44.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
44.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
44.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
44.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
43.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
43.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
43.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
43.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
43.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
43.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
42.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
42.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
42.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
42.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
42.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
42.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
42.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
41.6
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
41.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
41.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
40.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
40.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
40.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
40.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
39.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
39.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
39.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
39.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
39.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
38.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
38.7
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
38.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
38.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
38.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
37.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
37.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
37.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
37.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
36.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
36.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
36.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
35.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
35.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
35.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
35.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
34.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
34.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
34.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
34.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
34.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
33.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
33.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
33.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
33.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
32.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
32.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
32.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
31.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
30.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
30.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
30.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
30.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
30.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
29.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
29.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
29.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
29.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
29.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
29.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
28.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
28.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
28.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
28.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
27.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
26.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
24.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
23.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
22.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
20.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
20.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.