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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DPY19L1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DPY19L1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
231
Samples
Sample
Description
TPM
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
0.9
937
Tumor
0.7
755
Tumor
0.7
126
Normal
0.7
114
Normal
0.7
137
Tumor
0.7
113
Tumor
0.7
128
Normal
0.7
124
Normal
0.7
111
Normal
0.7
358
Normal
0.6
125
Tumor
0.6
915
Tumor
0.6
665
Tumor
0.6
432
Normal
0.5
261
Tumor
0.5
662
Normal
0.5
172
Normal
0.5
298
Normal
0.5
342
Normal
0.5
354
Normal
0.5
162
Normal
0.5
257
Tumor
0.5
352
Normal
0.5
353
Tumor
0.5
414
Normal
0.5
138
Normal
0.4
148
Normal
0.4
813
Tumor
0.4
188
Normal
0.4
911
Tumor
0.4
666
Normal
0.4
218
Normal
0.4
568
Normal
0.4
132
Normal
0.4
332
Normal
0.4
672
Normal
0.4
186
Normal
0.4
196
Normal
0.4
214
Normal
0.4
648
Normal
0.4
914
Normal
0.4
344
Normal
0.4
171
Tumor
0.4
192
Normal
0.4
444
Normal
0.4
434
Normal
0.4
452
Normal
0.4
564
Normal
0.4
468
Normal
0.4
272
Normal
0.4
523
Tumor
0.4
742
Normal
0.4
258
Normal
0.4
451
Tumor
0.4
446
Normal
0.3
146
Normal
0.3
222
Normal
0.3
314
Normal
0.3
311
Tumor
0.3
213
Tumor
0.3
127
Tumor
0.3
636
Normal
0.3
431
Tumor
0.3
426
Normal
0.3
981
Tumor
0.3
574
Normal
0.3
436
Normal
0.3
161
Tumor
0.3
814
Normal
0.3
427
Tumor
0.3
388
Normal
0.3
268
Normal
0.3
392
Normal
0.3
278
Normal
0.3
232
Normal
0.3
664
Normal
0.3
435
Tumor
0.3
878
Normal
0.3
362
Normal
0.3
313
Tumor
0.2
376
Normal
0.2
366
Normal
0.2
286
Normal
0.2
642
Normal
0.2
136
Normal
0.2
456
Normal
0.2
384
Normal
0.2
778
Normal
0.2
884
Normal
0.2
467
Tumor
0.2
1027
Tumor
0.2
572
Normal
0.2
187
Tumor
0.2
394
Normal
0.2
816
Normal
0.2
217
Tumor
0.2
526
Normal
0.2
396
Normal
0.2
411
Tumor
0.2
141
Tumor
0.2
424
Normal
0.2
455
Tumor
0.2
573
Tumor
0.2
341
Tumor
0.2
262
Normal
0.2
744
Normal
0.2
351
Tumor
0.2
327
Tumor
0.2
786
Normal
0.2
746
Normal
0.2
815
Tumor
0.2
647
Tumor
0.2
462
Normal
0.1
912
Normal
0.1
882
Normal
0.1
558
Normal
0.1
824
Normal
0.1
723
Tumor
0.1
785
Tumor
0.1
142
Normal
0.1
185
Tumor
0.1
343
Tumor
0.1
738
Normal
0.1
518
Normal
0.1
728
Normal
0.1
433
Tumor
0.1
448
Normal
0.1
957
Tumor
0.1
862
Normal
0.1
423
Tumor
0.1
1043
Tumor
0.1
867
Tumor
0.1
487
Tumor
0.1
955
Tumor
0.1
464
Normal
0.1
368
Normal
0.1
425
Tumor
0.1
195
Tumor
0.1
743
Tumor
0.1
618
Normal
0.1
297
Tumor
0.0
866
Normal
0.0
383
Tumor
0.0
635
Tumor
0.0
864
Normal
0.0
686
Normal
0.0
466
Normal
0.0
628
Normal
0.0
491
Tumor
0.0
741
Tumor
0.0
563
Tumor
0.0
465
Tumor
0.0
428
Normal
0.0
1016
Normal
0.0
228
Normal
0.0
745
Tumor
0.0
191
Tumor
0.0
818
Normal
0.0
737
Tumor
0.0
1028
Normal
0.0
356
Normal
0.0
386
Normal
0.0
1026
Normal
0.0
284
Normal
0.0
852
Normal
0.0
463
Tumor
0.0
716
Normal
0.0
422
Normal
0.0
714
Normal
0.0
528
Normal
0.0
756
Normal
0.0
223
Tumor
0.0
312
Normal
-0.1
861
Tumor
-0.1
211
Tumor
-0.1
145
Tumor
-0.1
412
Normal
-0.1
357
Tumor
-0.1
966
Normal
-0.1
874
Normal
-0.1
481
Tumor
-0.1
447
Tumor
-0.1
224
Normal
-0.1
147
Tumor
-0.1
952
Normal
-0.1
375
Tumor
-0.1
685
Tumor
-0.1
617
Tumor
-0.1
1022
Normal
-0.1
956
Normal
-0.1
474
Normal
-0.1
1015
Tumor
-0.1
698
Normal
-0.1
984
Normal
-0.1
267
Tumor
-0.1
112
Tumor
-0.1
983
Tumor
-0.1
615
Tumor
-0.1
123
Tumor
-0.1
1046
Normal
-0.1
968
Normal
-0.1
722
Normal
-0.1
277
Tumor
-0.1
285
Tumor
-0.1
944
Normal
-0.1
982
Normal
-0.2
858
Normal
-0.2
616
Normal
-0.2
696
Normal
-0.2
492
Normal
-0.2
938
Normal
-0.2
1044
Normal
-0.2
1013
Tumor
-0.2
1014
Normal
-0.2
364
Normal
-0.2
924
Normal
-0.2
863
Tumor
-0.2
365
Tumor
-0.2
516
Normal
-0.2
954
Normal
-0.2
978
Normal
-0.2
443
Tumor
-0.2
391
Tumor
-0.2
212
Normal
-0.2
546
Normal
-0.3
557
Tumor
-0.3
472
Normal
-0.3
918
Normal
-0.3
857
Tumor
-0.3
395
Tumor
-0.3
721
Tumor
-0.3
361
Tumor
-0.3
868
Normal
-0.3
534
Normal
-0.3
421
Tumor
-0.3
554
Normal
-0.3
517
Tumor
-0.3
484
Normal
-0.3
536
Normal
-0.3
328
Normal
-0.3
482
Normal
-0.3
913
Tumor
-0.3
976
Normal
-0.3
387
Tumor
-0.3
494
Normal
-0.3
498
Normal
-0.3
881
Tumor
-0.3
413
Tumor
-0.3
524
Normal
-0.3
514
Normal
-0.3
488
Normal
-0.3
922
Normal
-0.3
571
Tumor
-0.4
671
Tumor
-0.4
715
Tumor
-0.4
363
Tumor
-0.4
497
Tumor
-0.4
416
Normal
-0.4
627
Tumor
-0.4
367
Tumor
-0.4
661
Tumor
-0.4
331
Tumor
-0.4
953
Tumor
-0.4
231
Tumor
-0.4
877
Tumor
-0.4
926
Normal
-0.4
355
Tumor
-0.4
697
Tumor
-0.4
865
Tumor
-0.4
916
Normal
-0.4
925
Tumor
-0.4
977
Tumor
-0.4
131
Tumor
-0.4
724
Normal
-0.4
964
Normal
-0.5
478
Normal
-0.5
1042
Normal
-0.5
727
Tumor
-0.5
477
Tumor
-0.5
527
Tumor
-0.5
227
Tumor
-0.5
515
Tumor
-0.5
777
Tumor
-0.5
943
Tumor
-0.5
917
Tumor
-0.5
873
Tumor
-0.5
535
Tumor
-0.5
525
Tumor
-0.5
958
Normal
-0.5
393
Tumor
-0.5
538
Normal
-0.5
713
Tumor
-0.5
1032
Normal
-0.5
283
Tumor
-0.5
513
Tumor
-0.5
415
Tumor
-0.5
641
Tumor
-0.5
923
Tumor
-0.5
221
Tumor
-0.5
461
Tumor
-0.6
823
Tumor
-0.6
135
Tumor
-0.6
1045
Tumor
-0.6
1041
Tumor
-0.6
817
Tumor
-0.6
385
Tumor
-0.6
963
Tumor
-0.7
965
Tumor
-0.7
1021
Tumor
-0.7
967
Tumor
-0.7
851
Tumor
-0.7
567
Tumor
-0.7
883
Tumor
-0.7
663
Tumor
-0.8
975
Tumor
-0.8
695
Tumor
-0.8
271
Tumor
-0.8
493
Tumor
-0.9
1025
Tumor
-0.9
483
Tumor
-1.0
545
Tumor
-1.0
537
Tumor
-1.1
921
Tumor
-1.1
471
Tumor
-1.2
473
Tumor
-1.3
533
Tumor
-1.3
951
Tumor
-1.4
1031
Tumor
-1.5
553
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
