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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF213 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF213 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.2
Number of samples
231
Samples
Sample
Description
TPM
DO45225
0 years, male, NA, stage:1, alive, 1050 days
59.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
54.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
53.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
52.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
50.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
49.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
41.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
39.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
38.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
36.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
32.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.6
525
Tumor
1.4
427
Tumor
0.9
1013
Tumor
0.9
883
Tumor
0.9
777
Tumor
0.9
865
Tumor
0.9
951
Tumor
0.8
937
Tumor
0.8
1021
Tumor
0.8
925
Tumor
0.8
1031
Tumor
0.7
477
Tumor
0.7
724
Normal
0.7
113
Tumor
0.7
375
Tumor
0.7
411
Tumor
0.6
433
Tumor
0.6
957
Tumor
0.6
355
Tumor
0.6
571
Tumor
0.6
471
Tumor
0.6
213
Tumor
0.6
123
Tumor
0.6
311
Tumor
0.6
647
Tumor
0.6
137
Tumor
0.6
861
Tumor
0.6
211
Tumor
0.5
327
Tumor
0.5
817
Tumor
0.5
557
Tumor
0.5
357
Tumor
0.5
661
Tumor
0.5
395
Tumor
0.5
257
Tumor
0.5
423
Tumor
0.4
465
Tumor
0.4
635
Tumor
0.4
567
Tumor
0.4
341
Tumor
0.4
953
Tumor
0.4
857
Tumor
0.4
277
Tumor
0.4
981
Tumor
0.4
573
Tumor
0.4
188
Normal
0.4
434
Normal
0.4
461
Tumor
0.4
641
Tumor
0.4
271
Tumor
0.3
161
Tumor
0.3
267
Tumor
0.3
221
Tumor
0.3
383
Tumor
0.3
917
Tumor
0.3
627
Tumor
0.3
685
Tumor
0.3
443
Tumor
0.3
553
Tumor
0.3
393
Tumor
0.3
727
Tumor
0.3
262
Normal
0.3
141
Tumor
0.3
881
Tumor
0.3
217
Tumor
0.3
467
Tumor
0.3
513
Tumor
0.3
195
Tumor
0.3
447
Tumor
0.3
1027
Tumor
0.3
741
Tumor
0.2
965
Tumor
0.2
451
Tumor
0.2
313
Tumor
0.2
421
Tumor
0.2
515
Tumor
0.2
435
Tumor
0.2
527
Tumor
0.2
493
Tumor
0.2
455
Tumor
0.2
814
Normal
0.2
497
Tumor
0.2
387
Tumor
0.2
185
Tumor
0.2
353
Tumor
0.2
975
Tumor
0.2
361
Tumor
0.2
966
Normal
0.2
536
Normal
0.2
147
Tumor
0.2
867
Tumor
0.2
955
Tumor
0.2
956
Normal
0.2
492
Normal
0.2
365
Tumor
0.2
431
Tumor
0.2
535
Tumor
0.2
663
Tumor
0.2
415
Tumor
0.1
915
Tumor
0.1
268
Normal
0.1
978
Normal
0.1
977
Tumor
0.1
1045
Tumor
0.1
391
Tumor
0.1
261
Tumor
0.1
483
Tumor
0.1
923
Tumor
0.1
873
Tumor
0.1
537
Tumor
0.1
1015
Tumor
0.1
127
Tumor
0.1
491
Tumor
0.1
187
Tumor
0.1
283
Tumor
0.1
343
Tumor
0.1
1043
Tumor
0.1
126
Normal
0.1
385
Tumor
0.1
231
Tumor
0.1
695
Tumor
0.1
524
Normal
0.0
963
Tumor
0.0
755
Tumor
0.0
563
Tumor
0.0
416
Normal
0.0
432
Normal
0.0
297
Tumor
0.0
171
Tumor
0.0
823
Tumor
0.0
615
Tumor
0.0
916
Normal
0.0
487
Tumor
0.0
737
Tumor
0.0
138
Normal
0.0
396
Normal
0.0
224
Normal
0.0
914
Normal
0.0
913
Tumor
0.0
362
Normal
0.0
218
Normal
0.0
721
Tumor
0.0
284
Normal
-0.1
921
Tumor
-0.1
473
Tumor
-0.1
386
Normal
-0.1
214
Normal
-0.1
983
Tumor
-0.1
286
Normal
-0.1
444
Normal
-0.1
212
Normal
-0.1
445
Tumor
-0.1
272
Normal
-0.1
498
Normal
-0.1
367
Tumor
-0.1
366
Normal
-0.1
745
Tumor
-0.1
446
Normal
-0.1
785
Tumor
-0.1
191
Tumor
-0.1
628
Normal
-0.1
545
Tumor
-0.1
258
Normal
-0.1
142
Normal
-0.1
384
Normal
-0.1
617
Tumor
-0.1
686
Normal
-0.1
1028
Normal
-0.1
852
Normal
-0.1
145
Tumor
-0.1
813
Tumor
-0.1
538
Normal
-0.1
351
Tumor
-0.1
422
Normal
-0.1
114
Normal
-0.1
146
Normal
-0.1
952
Normal
-0.2
358
Normal
-0.2
312
Normal
-0.2
232
Normal
-0.2
554
Normal
-0.2
851
Tumor
-0.2
884
Normal
-0.2
132
Normal
-0.2
518
Normal
-0.2
858
Normal
-0.2
662
Normal
-0.2
344
Normal
-0.2
124
Normal
-0.2
516
Normal
-0.2
478
Normal
-0.2
352
Normal
-0.2
815
Tumor
-0.2
574
Normal
-0.2
713
Tumor
-0.2
136
Normal
-0.2
1041
Tumor
-0.2
528
Normal
-0.2
111
Normal
-0.2
874
Normal
-0.2
448
Normal
-0.2
534
Normal
-0.2
1044
Normal
-0.2
526
Normal
-0.2
558
Normal
-0.2
228
Normal
-0.2
728
Normal
-0.2
954
Normal
-0.2
1042
Normal
-0.2
926
Normal
-0.2
278
Normal
-0.2
452
Normal
-0.2
125
Tumor
-0.2
982
Normal
-0.2
666
Normal
-0.2
192
Normal
-0.2
964
Normal
-0.2
332
Normal
-0.2
697
Tumor
-0.2
314
Normal
-0.2
464
Normal
-0.2
738
Normal
-0.2
368
Normal
-0.2
1046
Normal
-0.2
1016
Normal
-0.2
388
Normal
-0.2
462
Normal
-0.2
376
Normal
-0.2
456
Normal
-0.3
474
Normal
-0.3
135
Tumor
-0.3
172
Normal
-0.3
128
Normal
-0.3
696
Normal
-0.3
468
Normal
-0.3
514
Normal
-0.3
356
Normal
-0.3
463
Tumor
-0.3
665
Tumor
-0.3
494
Normal
-0.3
918
Normal
-0.3
466
Normal
-0.3
481
Tumor
-0.3
436
Normal
-0.3
523
Tumor
-0.3
618
Normal
-0.3
414
Normal
-0.3
715
Tumor
-0.3
664
Normal
-0.3
428
Normal
-0.3
392
Normal
-0.3
976
Normal
-0.3
412
Normal
-0.3
568
Normal
-0.3
863
Tumor
-0.3
922
Normal
-0.3
354
Normal
-0.3
816
Normal
-0.3
1014
Normal
-0.3
223
Tumor
-0.3
328
Normal
-0.3
196
Normal
-0.3
331
Tumor
-0.3
716
Normal
-0.3
862
Normal
-0.3
394
Normal
-0.3
472
Normal
-0.3
756
Normal
-0.3
911
Tumor
-0.3
642
Normal
-0.3
222
Normal
-0.3
722
Normal
-0.3
878
Normal
-0.3
671
Tumor
-0.3
866
Normal
-0.3
564
Normal
-0.3
112
Tumor
-0.3
943
Tumor
-0.3
944
Normal
-0.3
148
Normal
-0.3
958
Normal
-0.3
882
Normal
-0.3
698
Normal
-0.3
1022
Normal
-0.3
424
Normal
-0.3
162
Normal
-0.3
482
Normal
-0.4
924
Normal
-0.4
714
Normal
-0.4
864
Normal
-0.4
546
Normal
-0.4
824
Normal
-0.4
984
Normal
-0.4
227
Tumor
-0.4
616
Normal
-0.4
298
Normal
-0.4
786
Normal
-0.4
723
Tumor
-0.4
868
Normal
-0.4
488
Normal
-0.4
364
Normal
-0.4
818
Normal
-0.4
648
Normal
-0.4
968
Normal
-0.4
742
Normal
-0.4
672
Normal
-0.4
426
Normal
-0.4
744
Normal
-0.4
938
Normal
-0.4
1032
Normal
-0.4
1025
Tumor
-0.4
636
Normal
-0.4
363
Tumor
-0.4
1026
Normal
-0.4
746
Normal
-0.4
186
Normal
-0.4
572
Normal
-0.4
342
Normal
-0.5
425
Tumor
-0.5
778
Normal
-0.5
413
Tumor
-0.5
517
Tumor
-0.5
877
Tumor
-0.5
131
Tumor
-0.5
484
Normal
-0.5
912
Normal
-0.5
285
Tumor
-0.5
967
Tumor
-0.6
743
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
