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                                        TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
                                        ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
                                        ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
                                        ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
                                        SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                        ANTIBODIES
                                        AND
                                        VALIDATION
                                        Dictionary
                                        Small intestine
                                        Tissue proteome
                                        Intestine
                                        SMALL INTESTINE - Expression summary
                                        Protein expression
                                        Small intestinei

                                        On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                        Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                        If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                        h
                                        m
                                        l
                                        n
                                        Endocrine cells: Not detected
                                        Enterocytes: Not detected
                                        Enterocytes - Microvilli: Not detected
                                        Goblet cells: Not detected
                                        RNA expressioni

                                        A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                        The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                        Scroll down to view mRNA expression data in more detail.
                                        Consensus:20.5 nTPM
                                        HPA:15.0 nTPM
                                        GTEx:20.5 nTPM
                                        FANTOM5:74.8 Scaled Tags Per Million

                                        SMALL INTESTINE - Antibody stainingi

                                        Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

                                        Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

                                        Antibody HPA039079Antibody CAB002594
                                        Endocrine cells Not detected-
                                        Enterocytes Not detected-
                                        Enterocytes - Microvilli Not detected-
                                        Glandular cells -Not detected
                                        Goblet cells Not detected-





                                        SMALL INTESTINE - HPA RNA-seqi

                                        The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

                                        Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
                                        Average nTPMi

                                        Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                        15.0
                                        overview
                                        Male, age 65
                                        Small intestine sample 232
                                        nTPM: 18.7
                                        Cell types%
                                        Glandular cells:
                                        55

                                        Smooth muscle cells:
                                        5

                                        Other cell types:
                                        40

                                        overview
                                        Male, age 39
                                        Small intestine sample 233
                                        nTPM: 14.8
                                        Cell types%
                                        Glandular cells:
                                        40

                                        Smooth muscle cells:
                                        5

                                        Other cell types:
                                        55

                                        overview
                                        Male, age 68
                                        Small intestine sample 234
                                        nTPM: 14.2
                                        Cell types%
                                        Glandular cells:
                                        30

                                        Smooth muscle cells:
                                        15

                                        Other cell types:
                                        55

                                        N/A
                                        Male, age 85
                                        Small intestine sample 235
                                        nTPM: 12.2

                                        SMALL INTESTINE - GTEx RNA-seqi

                                        RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                        Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                        Max subtype nTPMi

                                        Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                        20.5
                                        GTEx sample id Sample description nTPM
                                        9.817.628.70.855.80102030405060708090
                                        9.817.628.70.855.80102030405060708090
                                        Small Intestine - Terminal Ileum
                                        Average nTPM: 20.5
                                        Samples: 187

                                        Max nTPM: 97.0
                                        Min nTPM: 0.8
                                        Std nTPM: 15.1
                                        Median nTPM: 17.6
                                        GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 97.0
                                        GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 64.4
                                        GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 63.8
                                        GTEX-131XG-1726-SM-5LZUR 50-59 years, female 60.5
                                        GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 57.1
                                        GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 55.8
                                        GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 52.3
                                        GTEX-16A39-1426-SM-6LLI6 30-39 years, female 51.8
                                        GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 51.5
                                        GTEX-183FY-1626-SM-793D8 20-29 years, male 50.1
                                        GTEX-11TUW-1926-SM-5BC58 60-69 years, male 47.8
                                        GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 47.6
                                        GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 46.2
                                        GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 44.9
                                        GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 44.1
                                        GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 43.9
                                        GTEX-X15G-1426-SM-4PQZK 50-59 years, female 43.6
                                        GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 43.4
                                        GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 42.8
                                        GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 42.0
                                        GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 40.1
                                        GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 39.7
                                        GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 38.8
                                        GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 38.5
                                        GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 38.1
                                        GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 37.7
                                        GTEX-14PK6-1626-SM-6871I 70-79 years, female 37.4
                                        GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 35.1
                                        GTEX-144GM-1026-SM-79OKU 20-29 years, male 34.6
                                        GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 33.2
                                        GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 32.2
                                        GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 32.1
                                        GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 32.0
                                        GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 31.9
                                        GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 31.4
                                        GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 31.2
                                        GTEX-1399S-2026-SM-5KM4B 30-39 years, female 30.9
                                        GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 30.5
                                        GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 30.3
                                        GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 30.1
                                        GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 30.1
                                        GTEX-1C475-1426-SM-793CH 40-49 years, female 29.9
                                        GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 29.5
                                        GTEX-1399R-2026-SM-5K7WN 30-39 years, male 29.4
                                        GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 29.4
                                        GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 29.1
                                        GTEX-11P82-0826-SM-5P9GU 20-29 years, male 28.9
                                        GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 28.5
                                        GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 28.3
                                        GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 28.1
                                        GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 28.0
                                        GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 27.2
                                        GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 25.9
                                        GTEX-XBED-1426-SM-4AT4G 60-69 years, male 25.8
                                        GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 25.6
                                        GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 25.4
                                        GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 24.9
                                        GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 24.7
                                        GTEX-YEC4-1726-SM-4W21E 40-49 years, male 24.6
                                        GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 24.3
                                        GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 24.2
                                        GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 24.0
                                        GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 24.0
                                        GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 23.7
                                        GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 23.3
                                        GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 23.2
                                        GTEX-13D11-0726-SM-5LZZB 50-59 years, female 23.0
                                        GTEX-13O61-1326-SM-5KM31 60-69 years, male 23.0
                                        GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 22.5
                                        GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 22.4
                                        GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 22.2
                                        GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 21.5
                                        GTEX-11DXX-1626-SM-5H11H 60-69 years, female 21.4
                                        GTEX-14PN3-2026-SM-68729 60-69 years, female 20.8
                                        GTEX-11EQ9-1326-SM-5985X 30-39 years, male 20.4
                                        GTEX-14PKU-1626-SM-6871C 40-49 years, female 20.2
                                        GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 19.8
                                        GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 19.4
                                        GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 19.1
                                        GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 18.8
                                        GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 18.7
                                        GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 18.7
                                        GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 18.6
                                        GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 18.3
                                        GTEX-1122O-1326-SM-5H11F 60-69 years, female 18.1
                                        GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 18.1
                                        GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 18.1
                                        GTEX-11P7K-1626-SM-5GU63 30-39 years, male 17.9
                                        GTEX-139YR-2226-SM-5IFFW 50-59 years, male 17.9
                                        GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 17.9
                                        GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 17.9
                                        GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 17.8
                                        GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 17.6
                                        GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 17.6
                                        GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 17.1
                                        GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 17.1
                                        GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 17.1
                                        GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 17.0
                                        GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 16.9
                                        GTEX-145LT-1026-SM-5LU9O 40-49 years, male 16.9
                                        GTEX-1AMFI-1926-SM-731F2 50-59 years, female 16.9
                                        GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 16.9
                                        GTEX-111YS-1426-SM-5GID8 60-69 years, male 16.7
                                        GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 16.7
                                        GTEX-13111-1426-SM-5DUW3 50-59 years, male 16.6
                                        GTEX-YFCO-1326-SM-664NV 40-49 years, male 16.2
                                        GTEX-11I78-1126-SM-5A5K5 50-59 years, female 16.0
                                        GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 15.7
                                        GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 15.4
                                        GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 15.3
                                        GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 15.2
                                        GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 15.0
                                        GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 14.9
                                        GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 14.8
                                        GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 14.7
                                        GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 14.6
                                        GTEX-14PJN-0826-SM-686ZL 30-39 years, male 14.5
                                        GTEX-145ME-0926-SM-5O9AR 40-49 years, female 13.9
                                        GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 13.7
                                        GTEX-139T6-1026-SM-5IJGC 50-59 years, male 13.6
                                        GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 13.6
                                        GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 13.5
                                        GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 13.4
                                        GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 13.3
                                        GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 13.2
                                        GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 13.0
                                        GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 13.0
                                        GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 12.9
                                        GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 12.6
                                        GTEX-ZTSS-0926-SM-59865 40-49 years, male 12.3
                                        GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 12.3
                                        GTEX-Y114-1426-SM-4TT6W 50-59 years, female 12.1
                                        GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 12.0
                                        GTEX-17HHE-1726-SM-79OKT 50-59 years, male 11.8
                                        GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 11.7
                                        GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 11.5
                                        GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 11.1
                                        GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 10.5
                                        GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 10.0
                                        GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 9.9
                                        GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 9.7
                                        GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 9.6
                                        GTEX-1192X-2526-SM-59868 50-59 years, male 9.5
                                        GTEX-133LE-1426-SM-5IFH1 20-29 years, female 9.3
                                        GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 8.9
                                        GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 8.0
                                        GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 7.8
                                        GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 7.8
                                        GTEX-13113-1226-SM-5EGHT 60-69 years, female 7.6
                                        GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 7.4
                                        GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 7.0
                                        GTEX-WFG7-1726-SM-4LVME 20-29 years, male 6.9
                                        GTEX-13O21-1026-SM-5IJDU 50-59 years, male 6.6
                                        GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 6.6
                                        GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 6.4
                                        GTEX-1497J-1926-SM-5TDCC 60-69 years, male 5.9
                                        GTEX-131XE-0926-SM-5HL7J 50-59 years, male 5.5
                                        GTEX-14PJ3-1326-SM-664O7 50-59 years, male 5.1
                                        GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 4.8
                                        GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 4.6
                                        GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 4.5
                                        GTEX-1C64O-2526-SM-79ONO 60-69 years, male 4.4
                                        GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 4.3
                                        GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 4.1
                                        GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 3.6
                                        GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 3.2
                                        GTEX-XMK1-1826-SM-4B66F 40-49 years, male 3.0
                                        GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 2.9
                                        GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 2.8
                                        GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2.8
                                        GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2.8
                                        GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2.6
                                        GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2.6
                                        GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2.4
                                        GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2.4
                                        GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 2.3
                                        GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2.1
                                        GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2.1
                                        GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1.9
                                        GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1.9
                                        GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1.7
                                        GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.5
                                        GTEX-117YX-0326-SM-5GICL 50-59 years, male 1.4
                                        GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1.2
                                        GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.2
                                        GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1.1
                                        GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 0.8
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                                        SMALL INTESTINE - FANTOM5 CAGEi

                                        RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                        Max subtype Scaled Tags Per Millioni

                                        Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

                                        74.8
                                        FANTOM5 sample id Sample description Scaled Tags Per Million
                                        Small intestine
                                        Scaled Tags Per Million: 74.8
                                        FF:10024-101D6 15,40,85 years, mixed 74.8

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