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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
63.5
nTPM
FANTOM5:
79.8
Scaled Tags Per Million
Pig:
79.0
nTPM
Allen mouse:
1.5
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
63.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 53.1
1984
Male, age 76, both hemispheres
63.0
2301
Female, age 85, both hemispheres
53.8
2188
Female, age 91, both hemispheres
48.2
2090
Male, age 80, both hemispheres
47.2
Dorsal cochlear nucleus nTPM: 51.4
2802
Male, age 74, right hemisphere
56.6
2370
Male, age 61, both hemispheres
51.8
2187
Female, age 91, both hemispheres
50.8
2058
Male, age 76, both hemispheres
49.8
2378
Male, age 80, both hemispheres
47.9
Dorsal tegmental nucleus nTPM: 48.5
1936
Male, age 76, left hemisphere
55.6
2083
Male, age 80, both hemispheres
53.8
2326
Male, age 74, both hemispheres
49.2
2358
Male, age 61, both hemispheres
35.3
Dorsolateral tegmental area nTPM: 47.4
2654
Male, age 80, both hemispheres
56.7
2751
Female, age 85, both hemispheres
52.9
2141
Male, age 76, both hemispheres
50.1
2360
Male, age 74, both hemispheres
45.2
2337
Male, age 61, both hemispheres
32.4
Kolliker-Fuse nucleus nTPM: 58.7
2315
Male, age 76, right hemisphere
71.3
2163
Male, age 80, both hemispheres
53.9
2793
Female, age 91, left hemisphere
50.8
Lateral lemniscal nuclei nTPM: 59.1
2169
Male, age 76, both hemispheres
70.8
2746
Female, age 85, left hemisphere
66.5
2453
Male, age 74, right hemisphere
57.3
2036
Male, age 80, both hemispheres
52.6
2320
Female, age 91, left hemisphere
48.1
Lateral parabrachial nucleus nTPM: 56.4
2139
Female, age 85, right hemisphere
74.5
2013
Male, age 80, both hemispheres
59.6
2792
Male, age 76, both hemispheres
55.6
2790
Male, age 61, both hemispheres
35.9
Lateral vestibular nucleus nTPM: 61.8
2184
Male, age 76, both hemispheres
68.0
2311
Male, age 80, both hemispheres
55.5
Locus coeruleus nTPM: 46.7
2317
Female, age 72, unknown
56.3
2123
Female, age 91, both hemispheres
52.8
2014
Male, age 55, unknown
49.5
1980
Male, age 76, both hemispheres
47.3
2162
Male, age 80, both hemispheres
45.1
2788
Male, age 74, unknown
39.3
2720
Male, age 74, both hemispheres
36.6
Medial parabrachial nucleus nTPM: 52.8
2463
Female, age 85, right hemisphere
59.3
2170
Female, age 91, both hemispheres
55.6
2786
Male, age 76, both hemispheres
54.5
2854
Male, age 80, both hemispheres
49.4
2156
Male, age 61, both hemispheres
45.1
Medial periolivary nuclei nTPM: 59.2
2063
Male, age 76, both hemispheres
68.7
2171
Female, age 85, both hemispheres
68.5
2791
Male, age 74, right hemisphere
61.8
2081
Male, age 80, both hemispheres
51.5
2458
Female, age 91, both hemispheres
45.6
Motor facial nucleus nTPM: 58.7
2062
Male, age 76, both hemispheres
79.7
2795
Female, age 91, both hemispheres
66.1
2365
Male, age 74, right hemisphere
56.1
2126
Male, age 61, both hemispheres
54.4
2327
Male, age 80, both hemispheres
52.8
2697
Female, age 85, both hemispheres
43.2
Motor trigeminal nucleus nTPM: 52.7
2079
Male, age 80, both hemispheres
59.8
2560
Male, age 74, both hemispheres
55.8
2309
Male, age 76, both hemispheres
55.3
2335
Male, age 61, both hemispheres
46.4
2321
Female, age 91, both hemispheres
46.3
Nuclei of the trapezoid body nTPM: 63.5
2735
Female, age 85, both hemispheres
72.1
2159
Male, age 61, both hemispheres
69.3
1983
Male, age 76, both hemispheres
69.2
2368
Female, age 91, both hemispheres
55.3
2166
Male, age 80, both hemispheres
51.8
Nucleus raphe magnus nTPM: 62.7
2160
Male, age 61, both hemispheres
84.4
2051
Male, age 76, both hemispheres
66.3
2172
Female, age 85, both hemispheres
65.9
2455
Male, age 74, both hemispheres
61.0
2328
Male, age 80, both hemispheres
54.3
2459
Female, age 91, both hemispheres
44.5
Paramedian reticular nucleus nTPM: 53.7
2057
Male, age 80, both hemispheres
62.2
2050
Female, age 85, both hemispheres
55.5
2313
Male, age 61, both hemispheres
53.2
2052
Male, age 76, both hemispheres
43.9
Pedunculopontine tegmental nucleus nTPM: 44.1
1921
Female, age 85, both hemispheres
53.1
2334
Male, age 80, both hemispheres
46.1
2338
Male, age 61, both hemispheres
33.0
Pontine nuclei nTPM: 63.2
1863
Male, age 55, unknown
78.3
2787
Female, age 85, both hemispheres
77.5
1968
Male, age 76, left hemisphere
74.9
2727
Male, age 61, right hemisphere
71.8
2109
Female, age 72, unknown
61.7
2115
Male, age 80, left hemisphere
57.7
2319
Female, age 91, both hemispheres
45.1
2454
Male, age 74, left hemisphere
38.6
Pontine raphe nucleus nTPM: 53.7
2122
Female, age 85, midline
56.3
2853
Male, age 76, midline
51.1
Posteroventral cochlear nucleus nTPM: 47.8
2371
Male, age 61, both hemispheres
52.7
2752
Female, age 85, both hemispheres
51.4
2070
Male, age 76, both hemispheres
49.4
2135
Female, age 91, both hemispheres
42.9
2341
Male, age 80, both hemispheres
42.6
Principal sensory trigeminal nucleus nTPM: 61.9
2158
Male, age 61, both hemispheres
78.8
2324
Male, age 76, both hemispheres
63.5
2008
Male, age 80, left hemisphere
60.6
2367
Female, age 91, left hemisphere
44.8
Reticular pontine nucleus, caudal nTPM: 54.2
2092
Male, age 76, both hemispheres
66.8
2332
Male, age 80, right hemisphere
58.0
2457
Female, age 91, both hemispheres
48.1
2559
Male, age 74, both hemispheres
44.1
Reticular pontine nucleus, oral nTPM: 51.2
2012
Female, age 85, both hemispheres
59.3
1939
Male, age 80, both hemispheres
51.8
2167
Male, age 76, both hemispheres
51.8
2366
Female, age 91, both hemispheres
48.5
2361
Male, age 74, both hemispheres
44.8
Reticulotegmental nucleus nTPM: 55.2
2325
Male, age 76, both hemispheres
57.6
2333
Male, age 80, both hemispheres
56.6
2452
Male, age 74, both hemispheres
54.1
2322
Female, age 91, both hemispheres
52.4
Spinal trigeminal nucleus, oral nTPM: 51.2
2737
Female, age 85, both hemispheres
54.4
2164
Male, age 80, both hemispheres
51.8
1978
Male, age 76, both hemispheres
47.3
Subcoeruleus area nTPM: 51.9
2089
Male, age 76, left hemisphere
64.6
1958
Male, age 80, both hemispheres
53.3
2369
Female, age 85, left hemisphere
50.9
2451
Male, age 74, both hemispheres
46.2
2323
Female, age 91, left hemisphere
44.4
Superior olive nTPM: 57.2
2364
Male, age 74, right hemisphere
60.6
2020
Male, age 76, both hemispheres
60.1
1875
Female, age 85, both hemispheres
59.3
2329
Male, age 80, right hemisphere
54.8
2561
Female, age 91, both hemispheres
51.4
Ventral periolivary nuclei nTPM: 58.3
2130
Female, age 85, both hemispheres
71.3
2165
Male, age 80, both hemispheres
64.5
2023
Male, age 76, both hemispheres
56.2
2794
Female, age 91, left hemisphere
41.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 52.8
1959
Male, age 76, both hemispheres
60.7
2161
Male, age 80, both hemispheres
56.8
2449
Male, age 74, both hemispheres
56.0
2840
Female, age 85, both hemispheres
54.4
2456
Female, age 91, both hemispheres
53.0
2359
Male, age 61, both hemispheres
35.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.0
Pig sample
Sample description
nTPM
Pons nTPM: 79.0
Samples: 4
Max nTPM: 89.7
Min nTPM: 67.0
Sample A
Female
89.7
Sample B
Female
77.8
Sample C
Male
67.0
Sample D
Male
81.4
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
