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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF622 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
82.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
48.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
41.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
41.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
36.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
36.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
35.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
35.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
34.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
33.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
33.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
33.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
32.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
31.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
31.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
30.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
30.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
29.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
27.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
26.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
21.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF622 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.3
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
79.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
45.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
40.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
38.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
35.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
2.0
685
Tumor
1.7
965
Tumor
1.5
171
Tumor
1.5
351
Tumor
1.4
473
Tumor
1.3
865
Tumor
1.3
1021
Tumor
1.3
395
Tumor
1.2
375
Tumor
1.2
331
Tumor
1.2
671
Tumor
1.1
743
Tumor
1.1
1027
Tumor
1.1
1041
Tumor
1.0
925
Tumor
1.0
567
Tumor
1.0
1015
Tumor
0.9
815
Tumor
0.8
533
Tumor
0.8
951
Tumor
0.8
131
Tumor
0.7
724
Normal
0.7
367
Tumor
0.7
483
Tumor
0.7
1013
Tumor
0.6
877
Tumor
0.6
537
Tumor
0.6
953
Tumor
0.6
517
Tumor
0.6
137
Tumor
0.6
217
Tumor
0.5
285
Tumor
0.5
545
Tumor
0.5
571
Tumor
0.5
665
Tumor
0.5
1031
Tumor
0.5
923
Tumor
0.5
497
Tumor
0.5
443
Tumor
0.5
983
Tumor
0.4
557
Tumor
0.4
977
Tumor
0.4
967
Tumor
0.4
261
Tumor
0.4
661
Tumor
0.4
873
Tumor
0.4
525
Tumor
0.4
535
Tumor
0.4
213
Tumor
0.3
211
Tumor
0.3
697
Tumor
0.3
161
Tumor
0.3
221
Tumor
0.3
913
Tumor
0.3
817
Tumor
0.3
435
Tumor
0.3
981
Tumor
0.3
112
Tumor
0.2
563
Tumor
0.2
737
Tumor
0.2
523
Tumor
0.2
727
Tumor
0.2
127
Tumor
0.2
851
Tumor
0.2
755
Tumor
0.2
663
Tumor
0.2
741
Tumor
0.2
413
Tumor
0.1
883
Tumor
0.1
647
Tumor
0.1
573
Tumor
0.1
915
Tumor
0.1
527
Tumor
0.1
223
Tumor
0.1
267
Tumor
0.1
471
Tumor
0.1
957
Tumor
0.1
963
Tumor
0.1
327
Tumor
0.1
867
Tumor
0.1
1028
Normal
0.1
363
Tumor
0.1
515
Tumor
0.0
387
Tumor
0.0
191
Tumor
0.0
231
Tumor
0.0
227
Tumor
0.0
477
Tumor
0.0
113
Tumor
0.0
493
Tumor
0.0
383
Tumor
0.0
195
Tumor
0.0
553
Tumor
0.0
425
Tumor
0.0
427
Tumor
0.0
147
Tumor
0.0
391
Tumor
0.0
145
Tumor
0.0
187
Tumor
0.0
355
Tumor
0.0
451
Tumor
0.0
353
Tumor
0.0
297
Tumor
0.0
135
Tumor
-0.1
385
Tumor
-0.1
1025
Tumor
-0.1
823
Tumor
-0.1
467
Tumor
-0.1
421
Tumor
-0.1
491
Tumor
-0.1
975
Tumor
-0.1
461
Tumor
-0.1
455
Tumor
-0.1
911
Tumor
-0.1
447
Tumor
-0.1
785
Tumor
-0.1
465
Tumor
-0.1
635
Tumor
-0.1
492
Normal
-0.1
627
Tumor
-0.1
411
Tumor
-0.1
1032
Normal
-0.1
1026
Normal
-0.1
615
Tumor
-0.1
863
Tumor
-0.1
937
Tumor
-0.1
617
Tumor
-0.1
141
Tumor
-0.1
1022
Normal
-0.1
257
Tumor
-0.1
513
Tumor
-0.1
672
Normal
-0.2
666
Normal
-0.2
341
Tumor
-0.2
368
Normal
-0.2
857
Tumor
-0.2
332
Normal
-0.2
423
Tumor
-0.2
431
Tumor
-0.2
861
Tumor
-0.2
715
Tumor
-0.2
955
Tumor
-0.2
1045
Tumor
-0.2
921
Tumor
-0.2
524
Normal
-0.2
922
Normal
-0.2
943
Tumor
-0.2
813
Tumor
-0.2
978
Normal
-0.2
516
Normal
-0.2
958
Normal
-0.2
311
Tumor
-0.2
814
Normal
-0.2
968
Normal
-0.2
723
Tumor
-0.2
422
Normal
-0.2
498
Normal
-0.2
546
Normal
-0.2
128
Normal
-0.2
713
Tumor
-0.2
185
Tumor
-0.2
662
Normal
-0.3
433
Tumor
-0.3
1014
Normal
-0.3
528
Normal
-0.3
474
Normal
-0.3
852
Normal
-0.3
984
Normal
-0.3
352
Normal
-0.3
283
Tumor
-0.3
976
Normal
-0.3
728
Normal
-0.3
138
Normal
-0.3
1043
Tumor
-0.3
514
Normal
-0.3
744
Normal
-0.3
641
Tumor
-0.3
393
Tumor
-0.3
881
Tumor
-0.3
284
Normal
-0.3
396
Normal
-0.3
554
Normal
-0.3
1042
Normal
-0.3
466
Normal
-0.3
572
Normal
-0.3
362
Normal
-0.3
271
Tumor
-0.3
982
Normal
-0.3
212
Normal
-0.3
277
Tumor
-0.3
944
Normal
-0.3
756
Normal
-0.3
964
Normal
-0.3
628
Normal
-0.3
494
Normal
-0.3
966
Normal
-0.3
488
Normal
-0.3
722
Normal
-0.3
142
Normal
-0.3
536
Normal
-0.3
695
Tumor
-0.3
564
Normal
-0.3
518
Normal
-0.3
916
Normal
-0.3
686
Normal
-0.3
484
Normal
-0.3
132
Normal
-0.3
558
Normal
-0.3
534
Normal
-0.3
124
Normal
-0.3
664
Normal
-0.3
636
Normal
-0.3
818
Normal
-0.3
376
Normal
-0.3
866
Normal
-0.3
526
Normal
-0.3
696
Normal
-0.3
365
Tumor
-0.3
714
Normal
-0.3
478
Normal
-0.3
298
Normal
-0.3
444
Normal
-0.4
286
Normal
-0.4
574
Normal
-0.4
228
Normal
-0.4
952
Normal
-0.4
924
Normal
-0.4
224
Normal
-0.4
328
Normal
-0.4
218
Normal
-0.4
487
Tumor
-0.4
642
Normal
-0.4
568
Normal
-0.4
912
Normal
-0.4
938
Normal
-0.4
278
Normal
-0.4
232
Normal
-0.4
746
Normal
-0.4
222
Normal
-0.4
342
Normal
-0.4
392
Normal
-0.4
616
Normal
-0.4
721
Tumor
-0.4
314
Normal
-0.4
448
Normal
-0.4
136
Normal
-0.4
864
Normal
-0.4
618
Normal
-0.4
415
Tumor
-0.4
356
Normal
-0.4
361
Tumor
-0.4
954
Normal
-0.4
313
Tumor
-0.4
538
Normal
-0.4
214
Normal
-0.4
364
Normal
-0.4
388
Normal
-0.4
468
Normal
-0.4
416
Normal
-0.4
192
Normal
-0.4
738
Normal
-0.4
114
Normal
-0.4
196
Normal
-0.4
1016
Normal
-0.4
472
Normal
-0.4
384
Normal
-0.4
354
Normal
-0.4
262
Normal
-0.5
742
Normal
-0.5
824
Normal
-0.5
125
Tumor
-0.5
878
Normal
-0.5
858
Normal
-0.5
394
Normal
-0.5
882
Normal
-0.5
426
Normal
-0.5
926
Normal
-0.5
463
Tumor
-0.5
786
Normal
-0.5
434
Normal
-0.5
436
Normal
-0.5
868
Normal
-0.5
816
Normal
-0.5
446
Normal
-0.5
862
Normal
-0.5
482
Normal
-0.5
1046
Normal
-0.5
884
Normal
-0.5
146
Normal
-0.5
188
Normal
-0.5
918
Normal
-0.5
914
Normal
-0.5
148
Normal
-0.5
1044
Normal
-0.5
357
Tumor
-0.5
126
Normal
-0.5
424
Normal
-0.5
366
Normal
-0.5
481
Tumor
-0.5
917
Tumor
-0.5
648
Normal
-0.5
358
Normal
-0.5
462
Normal
-0.6
445
Tumor
-0.6
956
Normal
-0.6
111
Normal
-0.6
698
Normal
-0.6
312
Normal
-0.6
874
Normal
-0.6
386
Normal
-0.6
268
Normal
-0.6
344
Normal
-0.6
456
Normal
-0.6
414
Normal
-0.6
428
Normal
-0.6
412
Normal
-0.6
716
Normal
-0.6
258
Normal
-0.6
272
Normal
-0.6
778
Normal
-0.7
464
Normal
-0.7
186
Normal
-0.7
452
Normal
-0.7
172
Normal
-0.7
343
Tumor
-0.7
432
Normal
-0.7
745
Tumor
-0.7
162
Normal
-0.8
777
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.