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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF26 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
55.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
52.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
42.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
41.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
38.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
36.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
31.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF26 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.0
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
51.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
186
Normal
1.4
395
Tumor
1.4
965
Tumor
1.3
426
Normal
1.2
427
Tumor
1.2
428
Normal
1.2
546
Normal
1.1
224
Normal
1.1
642
Normal
1.1
423
Tumor
1.1
391
Tumor
1.1
967
Tumor
1.0
413
Tumor
1.0
424
Normal
1.0
957
Tumor
1.0
534
Normal
1.0
162
Normal
0.9
148
Normal
0.9
286
Normal
0.9
172
Normal
0.9
422
Normal
0.8
188
Normal
0.8
414
Normal
0.8
228
Normal
0.8
341
Tumor
0.7
981
Tumor
0.7
628
Normal
0.7
616
Normal
0.7
695
Tumor
0.6
421
Tumor
0.6
396
Normal
0.6
672
Normal
0.6
554
Normal
0.6
357
Tumor
0.6
1014
Normal
0.6
538
Normal
0.6
1027
Tumor
0.6
487
Tumor
0.6
984
Normal
0.5
343
Tumor
0.5
344
Normal
0.5
666
Normal
0.5
975
Tumor
0.5
267
Tumor
0.5
665
Tumor
0.5
686
Normal
0.5
217
Tumor
0.5
648
Normal
0.5
882
Normal
0.5
636
Normal
0.5
982
Normal
0.4
528
Normal
0.4
425
Tumor
0.4
473
Tumor
0.4
977
Tumor
0.4
617
Tumor
0.4
523
Tumor
0.4
914
Normal
0.4
713
Tumor
0.4
1045
Tumor
0.4
722
Normal
0.4
662
Normal
0.4
185
Tumor
0.4
258
Normal
0.4
257
Tumor
0.4
618
Normal
0.3
388
Normal
0.3
451
Tumor
0.3
664
Normal
0.3
518
Normal
0.3
1021
Tumor
0.3
268
Normal
0.3
271
Tumor
0.3
232
Normal
0.3
615
Tumor
0.3
1041
Tumor
0.3
715
Tumor
0.3
513
Tumor
0.3
394
Normal
0.3
452
Normal
0.3
191
Tumor
0.3
1015
Tumor
0.3
358
Normal
0.3
464
Normal
0.3
963
Tumor
0.3
878
Normal
0.3
222
Normal
0.3
1031
Tumor
0.2
921
Tumor
0.2
171
Tumor
0.2
1025
Tumor
0.2
465
Tumor
0.2
515
Tumor
0.2
721
Tumor
0.2
195
Tumor
0.2
877
Tumor
0.2
647
Tumor
0.2
1022
Normal
0.2
463
Tumor
0.2
262
Normal
0.1
913
Tumor
0.1
978
Normal
0.1
127
Tumor
0.1
415
Tumor
0.1
627
Tumor
0.1
467
Tumor
0.1
641
Tumor
0.1
214
Normal
0.1
283
Tumor
0.1
218
Normal
0.1
488
Normal
0.1
915
Tumor
0.1
386
Normal
0.1
535
Tumor
0.1
494
Normal
0.1
635
Tumor
0.1
284
Normal
0.1
477
Tumor
0.1
161
Tumor
0.1
466
Normal
0.1
456
Normal
0.1
526
Normal
0.1
231
Tumor
0.1
863
Tumor
0.1
111
Normal
0.1
817
Tumor
0.1
536
Normal
0.1
912
Normal
0.1
261
Tumor
0.1
126
Normal
0.1
444
Normal
0.1
663
Tumor
0.1
327
Tumor
0.1
698
Normal
0.1
196
Normal
0.1
1043
Tumor
0.0
671
Tumor
0.0
328
Normal
0.0
187
Tumor
0.0
1028
Normal
0.0
353
Tumor
0.0
448
Normal
0.0
342
Normal
0.0
716
Normal
0.0
125
Tumor
0.0
925
Tumor
0.0
272
Normal
0.0
352
Normal
0.0
966
Normal
0.0
221
Tumor
0.0
484
Normal
0.0
493
Tumor
0.0
524
Normal
0.0
1044
Normal
0.0
113
Tumor
0.0
525
Tumor
0.0
696
Normal
0.0
128
Normal
0.0
124
Normal
0.0
516
Normal
0.0
1026
Normal
0.0
363
Tumor
0.0
862
Normal
0.0
468
Normal
0.0
455
Tumor
0.0
868
Normal
0.0
545
Tumor
-0.1
351
Tumor
-0.1
497
Tumor
-0.1
1016
Normal
-0.1
866
Normal
-0.1
498
Normal
-0.1
858
Normal
-0.1
474
Normal
-0.1
816
Normal
-0.1
412
Normal
-0.1
114
Normal
-0.1
685
Tumor
-0.1
1042
Normal
-0.1
112
Tumor
-0.1
514
Normal
-0.1
356
Normal
-0.1
553
Tumor
-0.1
478
Normal
-0.1
364
Normal
-0.1
714
Normal
-0.1
483
Tumor
-0.1
492
Normal
-0.1
881
Tumor
-0.1
446
Normal
-0.1
1046
Normal
-0.2
1032
Normal
-0.2
471
Tumor
-0.2
883
Tumor
-0.2
482
Normal
-0.2
472
Normal
-0.2
213
Tumor
-0.2
922
Normal
-0.2
517
Tumor
-0.2
432
Normal
-0.2
911
Tumor
-0.2
1013
Tumor
-0.2
227
Tumor
-0.2
968
Normal
-0.2
861
Tumor
-0.2
434
Normal
-0.2
411
Tumor
-0.2
416
Normal
-0.2
481
Tumor
-0.2
435
Tumor
-0.3
212
Normal
-0.3
223
Tumor
-0.3
697
Tumor
-0.3
354
Normal
-0.3
852
Normal
-0.3
147
Tumor
-0.3
923
Tumor
-0.3
447
Tumor
-0.3
918
Normal
-0.3
355
Tumor
-0.3
491
Tumor
-0.3
976
Normal
-0.3
884
Normal
-0.3
823
Tumor
-0.3
916
Normal
-0.3
192
Normal
-0.4
824
Normal
-0.4
924
Normal
-0.4
661
Tumor
-0.4
873
Tumor
-0.4
865
Tumor
-0.4
445
Tumor
-0.4
436
Normal
-0.4
431
Tumor
-0.4
867
Tumor
-0.4
533
Tumor
-0.4
123
Tumor
-0.4
285
Tumor
-0.4
958
Normal
-0.5
864
Normal
-0.5
462
Normal
-0.5
815
Tumor
-0.5
461
Tumor
-0.5
874
Normal
-0.5
926
Normal
-0.5
393
Tumor
-0.6
392
Normal
-0.6
433
Tumor
-0.6
527
Tumor
-0.6
851
Tumor
-0.6
964
Normal
-0.7
443
Tumor
-0.7
818
Normal
-0.8
857
Tumor
-0.8
385
Tumor
-0.9
917
Tumor
-0.9
537
Tumor
-1.0
387
Tumor
-1.2
211
Tumor
-1.2
983
Tumor
-1.5
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
