MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.7 nTPM
HPA Brain:17.6 nTPM
GTEx:24.7 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:6.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.6
2411 Female, age 72, unknown 23.3
2019 Male, age 18, unknown 20.8
1870 Female, age 42, unknown 18.1
1833 Male, age 53, unknown 18.0
1830 Male, age 51, unknown 16.3
1827 Male, age 72, unknown 14.7
2828 Female, age 72, unknown 14.5
2586 Male, age 75, left hemisphere 13.9
2666 Male, age 74, left hemisphere 13.5
2219 Male, age 76, both hemispheres 12.7
Dorsal raphe nucleus
nTPM: 16.0
2750 Male, age 76, both hemispheres 19.1
1828 Male, age 53, unknown 17.5
2047 Male, age 72, unknown 15.3
2298 Female, age 72, unknown 15.2
2016 Female, age 72, unknown 12.9
Inferior colliculus
nTPM: 15.9
2097 Female, age 72, unknown 18.0
1890 Male, age 53, unknown 16.5
1848 Female, age 42, unknown 15.4
2849 Male, age 72, unknown 13.8
Median raphe nucleus
nTPM: 16.5
2220 Male, age 76, midline 16.5
Periaquaductal grey, anterior
nTPM: 14.6
1947 Male, age 18, unknown 15.2
2502 Female, age 75, unknown 14.8
1795 Male, age 51, unknown 13.7
Periaquaductal grey, dorsal
nTPM: 14.1
1831 Male, age 72, unknown 14.8
2464 Female, age 72, unknown 14.8
2850 Male, age 76, both hemispheres 13.7
1840 Male, age 53, unknown 13.0
Periaquaductal grey, lateral
nTPM: 13.9
2272 Male, age 74, both hemispheres 15.5
2053 Male, age 18, unknown 13.8
2140 Male, age 76, both hemispheres 12.3
Pretectal area
nTPM: 17.6
2667 Female, age 75, unknown 20.0
2007 Male, age 72, unknown 19.7
1817 Female, age 42, unknown 19.4
1815 Male, age 53, unknown 18.9
1816 Male, age 51, unknown 18.7
1944 Female, age 72, unknown 17.4
2224 Female, age 72, unknown 17.2
2273 Male, age 74, both hemispheres 16.2
2316 Male, age 76, right hemisphere 16.1
2825 Male, age 18, unknown 15.6
2407 Male, age 75, both hemispheres 14.4
Red nucleus
nTPM: 17.4
1821 Female, age 72, unknown 22.2
1865 Male, age 51, unknown 19.7
2823 Male, age 76, right hemisphere 19.1
2503 Female, age 72, unknown 18.4
2725 Female, age 75, unknown 17.9
2785 Male, age 18, unknown 17.9
1904 Male, age 53, unknown 17.0
2769 Male, age 72, unknown 17.0
2227 Male, age 72, unknown 16.1
1954 Female, age 42, unknown 15.9
2588 Male, age 74, left hemisphere 15.8
2584 Male, age 75, left hemisphere 12.1
Substantia nigra
nTPM: 17.4
2241 Male, age 72, unknown 21.1
1889 Female, age 72, unknown 19.8
2409 Female, age 72, unknown 19.3
1851 Male, age 51, unknown 18.6
1916 Female, age 42, unknown 18.4
1941 Male, age 53, unknown 17.2
2665 Male, age 74, both hemispheres 15.4
2583 Male, age 75, right hemisphere 14.9
2699 Male, age 18, unknown 14.8
2590 Female, age 75, unknown 14.3
Superior colliculus
nTPM: 16.1
1895 Male, age 76, right hemisphere 19.2
2587 Male, age 74, left hemisphere 18.9
1913 Female, age 42, unknown 16.8
2087 Female, age 72, unknown 16.7
2668 Female, age 75, unknown 15.9
1995 Male, age 72, unknown 15.8
2261 Male, age 18, unknown 15.1
1796 Male, age 53, unknown 14.7
1839 Male, age 51, unknown 14.5
2664 Male, age 75, both hemispheres 13.4
Ventral tegmental area
nTPM: 17.2
2410 Female, age 72, unknown 21.2
2218 Male, age 76, both hemispheres 18.6
2223 Female, age 72, unknown 16.9
1915 Female, age 42, unknown 16.6
1942 Male, age 51, unknown 15.3
2021 Male, age 53, unknown 15.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.7
Samples: 139

Max nTPM: 47.7
Min nTPM: 13.6
Std nTPM: 4.8
Median nTPM: 24.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 47.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 41.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 34.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 32.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 32.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 31.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 31.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 31.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 31.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 31.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.7
FF:10158-103A5 76 years, female 32.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.9
Samples: 4

Max nTPM: 52.0
Min nTPM: 21.1
Sample A Female 52.0
Sample B Female 31.7
Sample C Male 50.6
Sample D Male 21.1
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 45.7
Min nTPM: 24.0
Sample A Female 24.0
Sample B Female 38.9
Sample C Male 36.0
Sample D Male 45.7
Periaqueductal gray
nTPM: 36.9
Samples: 3

Max nTPM: 43.6
Min nTPM: 32.5
Sample B Female 32.5
Sample C Male 43.6
Sample D Male 34.7
Superior colliculi
nTPM: 33.0
Samples: 4

Max nTPM: 45.5
Min nTPM: 19.5
Sample A Female 45.5
Sample B Female 19.5
Sample C Male 32.8
Sample D Male 34.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.5
Sample A Male 6.7
Sample B Male 5.5
Sample C Female 7.5
Sample D Female 6.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71919158 Antisense, RP_051012_02_A11, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org