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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DAG1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
114.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
107.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
99.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
90.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
88.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
81.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
74.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
72.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
69.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
68.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
66.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
65.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
64.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
64.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
63.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
62.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
61.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
61.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
60.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
59.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
59.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
59.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
56.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
56.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
56.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
54.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
53.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
53.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
53.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
52.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
52.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
52.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
51.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
51.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
49.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
48.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
48.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
48.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
48.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
48.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
48.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
48.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
47.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
47.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
45.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
45.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
44.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
43.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
43.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
43.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
42.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
42.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
41.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
40.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
40.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
39.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
39.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
39.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
39.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
39.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
38.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
37.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
37.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
36.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
36.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
34.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
33.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
33.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
32.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
31.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
26.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
26.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DAG1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.2
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
81.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
73.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
71.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
67.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
67.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
62.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
59.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
57.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
53.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
52.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
47.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
46.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
41.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
40.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
38.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
35.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
34.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
34.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
34.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
32.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
0.9
911
Tumor
0.8
1041
Tumor
0.6
915
Tumor
0.6
363
Tumor
0.6
741
Tumor
0.5
487
Tumor
0.5
743
Tumor
0.5
965
Tumor
0.5
958
Normal
0.4
192
Normal
0.4
185
Tumor
0.4
538
Normal
0.4
982
Normal
0.4
852
Normal
0.3
423
Tumor
0.3
878
Normal
0.3
874
Normal
0.3
412
Normal
0.3
227
Tumor
0.3
976
Normal
0.3
477
Tumor
0.3
816
Normal
0.3
448
Normal
0.3
884
Normal
0.3
867
Tumor
0.3
563
Tumor
0.3
416
Normal
0.3
474
Normal
0.3
716
Normal
0.3
954
Normal
0.3
516
Normal
0.3
465
Tumor
0.3
471
Tumor
0.3
478
Normal
0.3
462
Normal
0.3
498
Normal
0.3
1032
Normal
0.3
981
Tumor
0.3
261
Tumor
0.3
686
Normal
0.2
1015
Tumor
0.2
824
Normal
0.2
746
Normal
0.2
572
Normal
0.2
924
Normal
0.2
534
Normal
0.2
944
Normal
0.2
921
Tumor
0.2
127
Tumor
0.2
354
Normal
0.2
615
Tumor
0.2
364
Normal
0.2
137
Tumor
0.2
1028
Normal
0.2
916
Normal
0.2
483
Tumor
0.2
672
Normal
0.2
882
Normal
0.2
715
Tumor
0.2
212
Normal
0.2
881
Tumor
0.2
1022
Normal
0.2
925
Tumor
0.2
386
Normal
0.2
975
Tumor
0.2
861
Tumor
0.2
778
Normal
0.2
823
Tumor
0.2
546
Normal
0.2
918
Normal
0.2
514
Normal
0.2
312
Normal
0.2
517
Tumor
0.2
472
Normal
0.2
494
Normal
0.2
984
Normal
0.2
818
Normal
0.2
268
Normal
0.2
738
Normal
0.2
938
Normal
0.2
421
Tumor
0.2
362
Normal
0.2
742
Normal
0.2
922
Normal
0.2
912
Normal
0.2
1016
Normal
0.2
422
Normal
0.2
424
Normal
0.2
1042
Normal
0.2
415
Tumor
0.2
228
Normal
0.2
388
Normal
0.2
314
Normal
0.2
745
Tumor
0.2
482
Normal
0.2
977
Tumor
0.2
342
Normal
0.2
756
Normal
0.2
868
Normal
0.2
224
Normal
0.2
524
Normal
0.1
1044
Normal
0.1
558
Normal
0.1
574
Normal
0.1
1014
Normal
0.1
468
Normal
0.1
616
Normal
0.1
723
Tumor
0.1
391
Tumor
0.1
356
Normal
0.1
864
Normal
0.1
161
Tumor
0.1
696
Normal
0.1
526
Normal
0.1
698
Normal
0.1
564
Normal
0.1
968
Normal
0.1
435
Tumor
0.1
628
Normal
0.1
727
Tumor
0.1
384
Normal
0.1
786
Normal
0.1
444
Normal
0.1
272
Normal
0.1
636
Normal
0.1
112
Tumor
0.1
662
Normal
0.1
214
Normal
0.1
913
Tumor
0.1
714
Normal
0.1
554
Normal
0.1
648
Normal
0.1
777
Tumor
0.1
964
Normal
0.1
141
Tumor
0.1
873
Tumor
0.1
883
Tumor
0.1
568
Normal
0.1
188
Normal
0.1
862
Normal
0.1
278
Normal
0.1
123
Tumor
0.1
518
Normal
0.1
744
Normal
0.1
284
Normal
0.1
488
Normal
0.1
126
Normal
0.1
352
Normal
0.1
642
Normal
0.1
414
Normal
0.1
926
Normal
0.1
1046
Normal
0.1
426
Normal
0.1
1045
Tumor
0.1
466
Normal
0.1
1013
Tumor
0.1
492
Normal
0.1
473
Tumor
0.1
484
Normal
0.1
955
Tumor
0.1
537
Tumor
0.1
523
Tumor
0.1
128
Normal
0.1
267
Tumor
0.1
817
Tumor
0.1
1025
Tumor
0.1
956
Normal
0.1
515
Tumor
0.1
171
Tumor
0.1
755
Tumor
0.1
528
Normal
0.1
367
Tumor
0.0
627
Tumor
0.0
937
Tumor
0.0
146
Normal
0.0
618
Normal
0.0
145
Tumor
0.0
857
Tumor
0.0
114
Normal
0.0
664
Normal
0.0
142
Normal
0.0
452
Normal
0.0
186
Normal
0.0
413
Tumor
0.0
136
Normal
0.0
172
Normal
0.0
332
Normal
0.0
387
Tumor
0.0
966
Normal
0.0
328
Normal
0.0
451
Tumor
0.0
277
Tumor
0.0
124
Normal
0.0
461
Tumor
0.0
443
Tumor
0.0
148
Normal
0.0
785
Tumor
0.0
344
Normal
0.0
376
Normal
0.0
138
Normal
0.0
728
Normal
0.0
665
Tumor
0.0
525
Tumor
0.0
286
Normal
0.0
464
Normal
0.0
536
Normal
0.0
858
Normal
0.0
358
Normal
0.0
978
Normal
0.0
431
Tumor
0.0
1031
Tumor
0.0
963
Tumor
0.0
425
Tumor
0.0
396
Normal
0.0
187
Tumor
0.0
223
Tumor
0.0
1021
Tumor
0.0
863
Tumor
0.0
162
Normal
0.0
952
Normal
0.0
914
Normal
-0.1
481
Tumor
-0.1
851
Tumor
-0.1
394
Normal
-0.1
353
Tumor
-0.1
361
Tumor
-0.1
132
Normal
-0.1
355
Tumor
-0.1
666
Normal
-0.1
392
Normal
-0.1
131
Tumor
-0.1
258
Normal
-0.1
232
Normal
-0.1
1043
Tumor
-0.1
722
Normal
-0.1
147
Tumor
-0.1
545
Tumor
-0.1
983
Tumor
-0.1
943
Tumor
-0.1
617
Tumor
-0.1
923
Tumor
-0.1
434
Normal
-0.1
641
Tumor
-0.1
218
Normal
-0.1
866
Normal
-0.1
222
Normal
-0.1
1026
Normal
-0.1
814
Normal
-0.1
111
Normal
-0.1
343
Tumor
-0.1
366
Normal
-0.1
433
Tumor
-0.1
298
Normal
-0.1
685
Tumor
-0.1
257
Tumor
-0.1
647
Tumor
-0.2
567
Tumor
-0.2
432
Normal
-0.2
456
Normal
-0.2
221
Tumor
-0.2
967
Tumor
-0.2
196
Normal
-0.2
428
Normal
-0.2
445
Tumor
-0.2
327
Tumor
-0.2
365
Tumor
-0.2
463
Tumor
-0.2
953
Tumor
-0.2
737
Tumor
-0.2
341
Tumor
-0.2
231
Tumor
-0.2
113
Tumor
-0.2
393
Tumor
-0.2
262
Normal
-0.2
573
Tumor
-0.2
427
Tumor
-0.2
724
Normal
-0.2
721
Tumor
-0.2
553
Tumor
-0.2
331
Tumor
-0.2
285
Tumor
-0.2
446
Normal
-0.2
385
Tumor
-0.3
313
Tumor
-0.3
213
Tumor
-0.3
1027
Tumor
-0.3
368
Normal
-0.3
951
Tumor
-0.3
917
Tumor
-0.3
217
Tumor
-0.3
191
Tumor
-0.3
436
Normal
-0.3
447
Tumor
-0.3
411
Tumor
-0.3
513
Tumor
-0.3
813
Tumor
-0.3
125
Tumor
-0.3
311
Tumor
-0.3
297
Tumor
-0.3
635
Tumor
-0.3
455
Tumor
-0.3
195
Tumor
-0.3
663
Tumor
-0.3
395
Tumor
-0.3
957
Tumor
-0.3
671
Tumor
-0.4
135
Tumor
-0.4
571
Tumor
-0.4
695
Tumor
-0.4
497
Tumor
-0.4
493
Tumor
-0.5
351
Tumor
-0.5
357
Tumor
-0.5
557
Tumor
-0.5
877
Tumor
-0.6
491
Tumor
-0.6
527
Tumor
-0.6
535
Tumor
-0.6
283
Tumor
-0.6
815
Tumor
-0.6
467
Tumor
-0.6
713
Tumor
-0.6
383
Tumor
-0.7
271
Tumor
-0.7
375
Tumor
-0.7
697
Tumor
-0.7
865
Tumor
-0.7
211
Tumor
-0.9
661
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
