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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MZT2A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
66.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
364.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
321.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
318.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
262.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
214.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
213.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
206.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
198.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
186.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
173.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
173.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
173.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
166.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
164.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
160.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
157.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
151.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
147.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
147.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
147.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
146.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
144.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
143.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
141.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
135.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
134.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
133.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
130.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
130.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
128.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
125.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
124.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
124.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
124.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
123.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
122.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
122.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
122.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
121.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
121.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
119.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
118.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
117.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
115.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
114.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
113.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
112.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
111.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
110.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
109.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
106.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
103.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
101.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
101.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
100.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
100.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
100.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
100.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
99.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
99.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
98.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
98.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
97.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
97.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
97.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
95.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
94.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
94.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
93.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
93.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
92.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
91.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
91.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
91.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
90.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
89.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
89.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
89.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
88.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
88.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
88.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
87.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
87.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
86.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
86.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
84.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
84.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
84.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
83.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
82.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
82.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
82.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
82.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
81.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
81.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
81.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
80.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
80.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
80.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
79.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
78.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
78.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
77.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
77.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
77.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
76.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
76.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
75.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
75.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
74.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
74.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
73.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
73.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
73.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
73.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
72.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
72.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
72.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
72.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
72.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
72.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
71.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
71.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
71.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
71.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
71.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
70.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
70.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
68.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
68.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
68.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
67.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
66.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
66.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
65.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
65.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
65.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
65.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
64.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
63.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
62.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
62.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
61.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
61.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
61.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
61.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
61.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
61.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
60.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
60.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
60.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
60.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
60.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
59.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
59.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
59.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
59.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
58.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
58.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
58.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
57.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
57.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
57.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
57.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
57.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
57.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
57.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
56.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
56.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
56.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
56.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
55.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
55.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
55.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
55.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
55.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
53.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
53.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
52.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
52.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
52.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
51.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
51.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
51.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
51.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
51.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
51.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
51.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
50.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
50.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
50.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
50.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
50.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
50.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
50.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
50.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
49.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
49.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
49.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
49.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
48.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
48.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
48.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
47.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
47.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
46.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
46.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
45.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
44.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
44.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
44.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
44.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
44.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
43.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
43.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
43.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
42.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
42.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
42.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
42.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
42.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
42.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
42.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
42.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
41.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
41.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
41.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
41.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
41.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
41.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
40.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
40.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
40.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
40.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
40.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
40.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
39.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
39.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
39.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
39.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
38.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
38.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
38.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
37.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
36.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
36.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
36.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
36.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
35.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
35.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
35.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
35.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
34.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
32.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
27.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
25.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MZT2A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.2
Number of samples
231
Samples
Sample
Description
TPM
DO45285
0 years, male, NA, stage:3, alive, 480 days
135.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
117.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
88.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
87.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
85.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
84.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
77.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
77.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
76.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
74.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
73.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
71.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
68.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
67.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
66.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
64.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
63.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
62.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
59.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
57.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
56.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
56.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
55.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
54.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
52.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
51.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
50.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
50.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
49.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
48.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
46.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
46.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
46.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
45.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
43.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
38.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
38.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
34.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
31.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
28.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
227
Tumor
1.3
965
Tumor
1.2
436
Normal
1.0
361
Tumor
0.9
131
Tumor
0.9
366
Normal
0.8
222
Normal
0.8
498
Normal
0.8
218
Normal
0.7
957
Tumor
0.7
271
Tumor
0.7
1021
Tumor
0.7
434
Normal
0.7
877
Tumor
0.7
368
Normal
0.6
214
Normal
0.6
815
Tumor
0.6
384
Normal
0.6
482
Normal
0.6
741
Tumor
0.6
277
Tumor
0.6
376
Normal
0.6
686
Normal
0.6
196
Normal
0.6
411
Tumor
0.6
221
Tumor
0.5
1041
Tumor
0.5
128
Normal
0.5
967
Tumor
0.5
1013
Tumor
0.5
231
Tumor
0.5
367
Tumor
0.5
685
Tumor
0.5
392
Normal
0.5
386
Normal
0.5
743
Tumor
0.5
383
Tumor
0.5
918
Normal
0.5
396
Normal
0.5
567
Tumor
0.4
432
Normal
0.4
865
Tumor
0.4
435
Tumor
0.4
716
Normal
0.4
571
Tumor
0.4
388
Normal
0.4
926
Normal
0.4
375
Tumor
0.4
1027
Tumor
0.4
722
Normal
0.4
445
Tumor
0.4
714
Normal
0.4
257
Tumor
0.4
342
Normal
0.4
1032
Normal
0.4
883
Tumor
0.4
272
Normal
0.4
1022
Normal
0.4
916
Normal
0.4
393
Tumor
0.4
983
Tumor
0.4
286
Normal
0.3
262
Normal
0.3
351
Tumor
0.3
394
Normal
0.3
365
Tumor
0.3
922
Normal
0.3
1026
Normal
0.3
695
Tumor
0.3
463
Tumor
0.3
1043
Tumor
0.3
746
Normal
0.3
497
Tumor
0.3
756
Normal
0.3
192
Normal
0.3
738
Normal
0.3
778
Normal
0.3
923
Tumor
0.3
395
Tumor
0.3
814
Normal
0.3
387
Tumor
0.3
981
Tumor
0.3
481
Tumor
0.3
917
Tumor
0.3
195
Tumor
0.3
721
Tumor
0.3
362
Normal
0.3
951
Tumor
0.3
925
Tumor
0.3
568
Normal
0.3
228
Normal
0.3
953
Tumor
0.3
284
Normal
0.3
526
Normal
0.2
146
Normal
0.2
786
Normal
0.2
698
Normal
0.2
462
Normal
0.2
977
Tumor
0.2
518
Normal
0.2
142
Normal
0.2
728
Normal
0.2
217
Tumor
0.2
1045
Tumor
0.2
572
Normal
0.2
517
Tumor
0.2
433
Tumor
0.2
344
Normal
0.2
451
Tumor
0.2
385
Tumor
0.2
943
Tumor
0.2
124
Normal
0.2
391
Tumor
0.2
232
Normal
0.2
356
Normal
0.2
355
Tumor
0.2
313
Tumor
0.2
564
Normal
0.2
574
Normal
0.2
213
Tumor
0.1
661
Tumor
0.1
425
Tumor
0.1
924
Normal
0.1
881
Tumor
0.1
446
Normal
0.1
715
Tumor
0.1
1016
Normal
0.1
311
Tumor
0.1
1046
Normal
0.1
867
Tumor
0.1
557
Tumor
0.1
963
Tumor
0.1
357
Tumor
0.1
515
Tumor
0.1
474
Normal
0.1
944
Normal
0.1
224
Normal
0.1
558
Normal
0.1
554
Normal
0.1
713
Tumor
0.1
514
Normal
0.1
141
Tumor
0.1
723
Tumor
0.1
327
Tumor
0.1
1028
Normal
0.1
873
Tumor
0.1
1025
Tumor
0.1
513
Tumor
0.1
563
Tumor
0.1
745
Tumor
0.1
938
Normal
0.1
477
Tumor
0.1
697
Tumor
0.1
921
Tumor
0.1
126
Normal
0.1
742
Normal
0.1
212
Normal
0.1
573
Tumor
0.1
455
Tumor
0.0
911
Tumor
0.0
954
Normal
0.0
191
Tumor
0.0
258
Normal
0.0
516
Normal
0.0
866
Normal
0.0
534
Normal
0.0
528
Normal
0.0
874
Normal
0.0
283
Tumor
0.0
851
Tumor
0.0
861
Tumor
0.0
817
Tumor
0.0
975
Tumor
0.0
727
Tumor
0.0
426
Normal
0.0
111
Normal
0.0
472
Normal
0.0
447
Tumor
0.0
525
Tumor
0.0
862
Normal
0.0
546
Normal
0.0
858
Normal
0.0
937
Tumor
0.0
135
Tumor
0.0
461
Tumor
0.0
545
Tumor
0.0
868
Normal
0.0
635
Tumor
0.0
1044
Normal
0.0
864
Normal
0.0
696
Normal
0.0
982
Normal
0.0
823
Tumor
0.0
145
Tumor
0.0
755
Tumor
0.0
137
Tumor
0.0
813
Tumor
0.0
467
Tumor
0.0
358
Normal
0.0
328
Normal
0.0
465
Tumor
0.0
413
Tumor
-0.1
147
Tumor
-0.1
363
Tumor
-0.1
524
Normal
-0.1
412
Normal
-0.1
416
Normal
-0.1
448
Normal
-0.1
1014
Normal
-0.1
415
Tumor
-0.1
824
Normal
-0.1
724
Normal
-0.1
364
Normal
-0.1
636
Normal
-0.1
268
Normal
-0.1
523
Tumor
-0.1
185
Tumor
-0.1
915
Tumor
-0.1
618
Normal
-0.1
968
Normal
-0.1
857
Tumor
-0.1
343
Tumor
-0.1
471
Tumor
-0.1
1042
Normal
-0.1
553
Tumor
-0.1
527
Tumor
-0.2
642
Normal
-0.2
863
Tumor
-0.2
627
Tumor
-0.2
617
Tumor
-0.2
352
Normal
-0.2
127
Tumor
-0.2
984
Normal
-0.2
816
Normal
-0.2
431
Tumor
-0.2
187
Tumor
-0.2
628
Normal
-0.2
487
Tumor
-0.2
744
Normal
-0.2
452
Normal
-0.2
223
Tumor
-0.2
952
Normal
-0.2
261
Tumor
-0.2
161
Tumor
-0.2
444
Normal
-0.2
976
Normal
-0.2
647
Tumor
-0.2
285
Tumor
-0.2
422
Normal
-0.2
663
Tumor
-0.2
341
Tumor
-0.2
464
Normal
-0.3
473
Tumor
-0.3
353
Tumor
-0.3
211
Tumor
-0.3
138
Normal
-0.3
538
Normal
-0.3
1015
Tumor
-0.3
536
Normal
-0.3
671
Tumor
-0.3
978
Normal
-0.3
964
Normal
-0.3
958
Normal
-0.3
332
Normal
-0.3
132
Normal
-0.3
478
Normal
-0.3
354
Normal
-0.3
421
Tumor
-0.3
423
Tumor
-0.3
955
Tumor
-0.3
882
Normal
-0.3
456
Normal
-0.3
186
Normal
-0.3
188
Normal
-0.3
852
Normal
-0.3
966
Normal
-0.3
533
Tumor
-0.3
466
Normal
-0.3
913
Tumor
-0.3
737
Tumor
-0.3
914
Normal
-0.3
468
Normal
-0.3
428
Normal
-0.3
114
Normal
-0.3
535
Tumor
-0.3
537
Tumor
-0.3
878
Normal
-0.4
615
Tumor
-0.4
956
Normal
-0.4
443
Tumor
-0.4
884
Normal
-0.4
616
Normal
-0.4
171
Tumor
-0.4
488
Normal
-0.4
136
Normal
-0.4
314
Normal
-0.4
424
Normal
-0.4
664
Normal
-0.4
112
Tumor
-0.4
427
Tumor
-0.5
641
Tumor
-0.5
785
Tumor
-0.5
777
Tumor
-0.5
414
Normal
-0.5
818
Normal
-0.5
125
Tumor
-0.5
148
Normal
-0.5
162
Normal
-0.5
662
Normal
-0.5
312
Normal
-0.5
648
Normal
-0.5
298
Normal
-0.6
912
Normal
-0.6
666
Normal
-0.6
172
Normal
-0.6
672
Normal
-0.7
267
Tumor
-0.7
665
Tumor
-0.7
278
Normal
-0.7
331
Tumor
-0.7
123
Tumor
-0.8
297
Tumor
-0.8
484
Normal
-0.8
1031
Tumor
-0.9
491
Tumor
-0.9
493
Tumor
-0.9
483
Tumor
-0.9
113
Tumor
-1.0
494
Normal
-1.0
492
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.