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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MMRN2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.0025
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
53%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
38%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MMRN2 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.000076
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
85%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
0%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.3
Number of samples
231
Samples
Sample
Description
TPM
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
1.2
553
Tumor
1.2
647
Tumor
0.9
877
Tumor
0.9
671
Tumor
0.8
327
Tumor
0.8
1045
Tumor
0.8
615
Tumor
0.8
353
Tumor
0.8
261
Tumor
0.7
525
Tumor
0.7
695
Tumor
0.7
536
Normal
0.7
421
Tumor
0.7
545
Tumor
0.7
672
Normal
0.6
223
Tumor
0.6
367
Tumor
0.6
192
Normal
0.6
498
Normal
0.6
913
Tumor
0.6
627
Tumor
0.6
473
Tumor
0.6
957
Tumor
0.6
538
Normal
0.5
524
Normal
0.5
943
Tumor
0.5
563
Tumor
0.5
777
Tumor
0.5
467
Tumor
0.5
145
Tumor
0.5
471
Tumor
0.5
185
Tumor
0.5
823
Tumor
0.4
461
Tumor
0.4
785
Tumor
0.4
923
Tumor
0.4
713
Tumor
0.4
415
Tumor
0.4
195
Tumor
0.4
344
Normal
0.4
517
Tumor
0.4
965
Tumor
0.4
363
Tumor
0.4
857
Tumor
0.4
715
Tumor
0.4
227
Tumor
0.4
384
Normal
0.4
481
Tumor
0.4
535
Tumor
0.4
513
Tumor
0.4
778
Normal
0.3
727
Tumor
0.3
641
Tumor
0.3
954
Normal
0.3
141
Tumor
0.3
958
Normal
0.3
394
Normal
0.3
368
Normal
0.3
636
Normal
0.3
187
Tumor
0.3
697
Tumor
0.3
1044
Normal
0.3
392
Normal
0.3
488
Normal
0.3
444
Normal
0.3
1031
Tumor
0.3
341
Tumor
0.3
221
Tumor
0.3
1025
Tumor
0.3
744
Normal
0.3
146
Normal
0.3
515
Tumor
0.3
1015
Tumor
0.3
814
Normal
0.3
554
Normal
0.3
483
Tumor
0.3
331
Tumor
0.3
447
Tumor
0.3
383
Tumor
0.2
218
Normal
0.2
1043
Tumor
0.2
724
Normal
0.2
352
Normal
0.2
617
Tumor
0.2
433
Tumor
0.2
354
Normal
0.2
492
Normal
0.2
332
Normal
0.2
396
Normal
0.2
191
Tumor
0.2
571
Tumor
0.2
342
Normal
0.2
666
Normal
0.2
963
Tumor
0.2
395
Tumor
0.2
388
Normal
0.2
745
Tumor
0.2
161
Tumor
0.2
662
Normal
0.2
478
Normal
0.2
921
Tumor
0.2
981
Tumor
0.2
686
Normal
0.2
224
Normal
0.2
925
Tumor
0.2
984
Normal
0.2
533
Tumor
0.2
188
Normal
0.2
431
Tumor
0.2
455
Tumor
0.2
217
Tumor
0.2
222
Normal
0.2
516
Normal
0.2
213
Tumor
0.2
572
Normal
0.2
214
Normal
0.2
916
Normal
0.2
861
Tumor
0.1
142
Normal
0.1
863
Tumor
0.1
665
Tumor
0.1
982
Normal
0.1
376
Normal
0.1
124
Normal
0.1
297
Tumor
0.1
361
Tumor
0.1
493
Tumor
0.1
878
Normal
0.1
528
Normal
0.1
386
Normal
0.1
817
Tumor
0.1
534
Normal
0.1
364
Normal
0.1
196
Normal
0.1
413
Tumor
0.1
472
Normal
0.1
423
Tumor
0.1
1032
Normal
0.1
967
Tumor
0.1
574
Normal
0.1
968
Normal
0.1
412
Normal
0.1
137
Tumor
0.1
523
Tumor
0.1
1028
Normal
0.1
975
Tumor
0.1
884
Normal
0.1
474
Normal
0.1
642
Normal
0.1
278
Normal
0.1
696
Normal
0.1
716
Normal
0.1
414
Normal
0.1
977
Tumor
0.1
435
Tumor
0.1
448
Normal
0.1
127
Tumor
0.1
446
Normal
0.1
953
Tumor
0.1
944
Normal
0.0
917
Tumor
0.0
728
Normal
0.0
1022
Normal
0.0
918
Normal
0.0
268
Normal
0.0
416
Normal
0.0
391
Tumor
0.0
434
Normal
0.0
126
Normal
0.0
813
Tumor
0.0
312
Normal
0.0
356
Normal
0.0
546
Normal
0.0
852
Normal
0.0
956
Normal
0.0
558
Normal
0.0
277
Tumor
0.0
882
Normal
0.0
883
Tumor
0.0
422
Normal
0.0
284
Normal
0.0
358
Normal
0.0
874
Normal
0.0
816
Normal
0.0
721
Tumor
0.0
314
Normal
0.0
952
Normal
0.0
411
Tumor
0.0
138
Normal
0.0
494
Normal
0.0
443
Tumor
0.0
465
Tumor
0.0
477
Tumor
0.0
557
Tumor
0.0
926
Normal
0.0
915
Tumor
0.0
228
Normal
0.0
432
Normal
0.0
135
Tumor
0.0
186
Normal
0.0
881
Tumor
0.0
866
Normal
0.0
1046
Normal
0.0
722
Normal
0.0
428
Normal
0.0
862
Normal
-0.1
737
Tumor
-0.1
568
Normal
-0.1
393
Tumor
-0.1
355
Tumor
-0.1
976
Normal
-0.1
212
Normal
-0.1
526
Normal
-0.1
537
Tumor
-0.1
924
Normal
-0.1
723
Tumor
-0.1
365
Tumor
-0.1
818
Normal
-0.1
698
Normal
-0.1
755
Tumor
-0.1
756
Normal
-0.1
298
Normal
-0.1
664
Normal
-0.1
362
Normal
-0.1
426
Normal
-0.1
912
Normal
-0.1
357
Tumor
-0.1
112
Tumor
-0.1
922
Normal
-0.1
286
Normal
-0.1
462
Normal
-0.1
162
Normal
-0.1
482
Normal
-0.1
456
Normal
-0.1
514
Normal
-0.1
313
Tumor
-0.1
451
Tumor
-0.1
914
Normal
-0.1
786
Normal
-0.1
491
Tumor
-0.1
424
Normal
-0.1
271
Tumor
-0.1
1026
Normal
-0.1
128
Normal
-0.1
464
Normal
-0.1
132
Normal
-0.1
1042
Normal
-0.1
258
Normal
-0.1
873
Tumor
-0.1
484
Normal
-0.1
1016
Normal
-0.1
938
Normal
-0.1
111
Normal
-0.1
262
Normal
-0.1
436
Normal
-0.1
172
Normal
-0.1
445
Tumor
-0.1
466
Normal
-0.1
864
Normal
-0.2
1014
Normal
-0.2
425
Tumor
-0.2
964
Normal
-0.2
232
Normal
-0.2
487
Tumor
-0.2
148
Normal
-0.2
714
Normal
-0.2
746
Normal
-0.2
978
Normal
-0.2
966
Normal
-0.2
311
Tumor
-0.2
564
Normal
-0.2
366
Normal
-0.2
468
Normal
-0.2
171
Tumor
-0.2
648
Normal
-0.2
328
Normal
-0.2
497
Tumor
-0.2
685
Tumor
-0.2
231
Tumor
-0.2
951
Tumor
-0.2
742
Normal
-0.2
858
Normal
-0.2
1013
Tumor
-0.2
867
Tumor
-0.2
267
Tumor
-0.2
628
Normal
-0.2
937
Tumor
-0.2
136
Normal
-0.2
868
Normal
-0.2
743
Tumor
-0.3
955
Tumor
-0.3
618
Normal
-0.3
113
Tumor
-0.3
911
Tumor
-0.3
1041
Tumor
-0.3
147
Tumor
-0.3
635
Tumor
-0.3
616
Normal
-0.3
518
Normal
-0.3
125
Tumor
-0.3
272
Normal
-0.3
114
Normal
-0.3
257
Tumor
-0.3
738
Normal
-0.3
851
Tumor
-0.3
387
Tumor
-0.3
824
Normal
-0.3
1021
Tumor
-0.3
573
Tumor
-0.3
452
Normal
-0.4
527
Tumor
-0.4
661
Tumor
-0.4
463
Tumor
-0.4
385
Tumor
-0.4
427
Tumor
-0.4
1027
Tumor
-0.4
375
Tumor
-0.4
283
Tumor
-0.4
741
Tumor
-0.4
211
Tumor
-0.5
663
Tumor
-0.5
567
Tumor
-0.6
123
Tumor
-0.6
983
Tumor
-0.7
815
Tumor
-0.7
131
Tumor
-0.8
865
Tumor
-0.8
285
Tumor
-0.8
351
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.