We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
253.5
nTPM
HPA Brain:
320.1
nTPM
GTEx:
253.5
nTPM
FANTOM5:
440.6
Scaled Tags Per Million
Pig:
15.9
nTPM
Mouse:
9.8
nTPM
Allen mouse:
2.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
320.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 196.9
1898
Male, age 80, left hemisphere
275.9
2621
Female, age 67, right hemisphere
247.9
2529
Female, age 94, left hemisphere
218.9
1855
Male, age 76, left hemisphere
191.9
2148
Female, age 91, left hemisphere
170.6
1911
Female, age 85, right hemisphere
76.1
Dentate gyrus nTPM: 179.3
2246
Female, age 85, both hemispheres
269.7
2530
Female, age 94, left hemisphere
253.3
1927
Female, age 91, both hemispheres
163.6
2528
Male, age 74, both hemispheres
159.3
2010
Male, age 76, both hemispheres
154.3
2531
Female, age 67, both hemispheres
75.5
Entorhinal gyrus nTPM: 231.6
2613
Female, age 94, left hemisphere
312.3
1938
Female, age 85, left hemisphere
273.6
2764
Male, age 80, right hemisphere
273.2
1787
Male, age 76, left hemisphere
248.0
2686
Male, age 75, right hemisphere
178.5
2117
Female, age 91, right hemisphere
104.1
Hippocampus, CA1 nTPM: 179.8
2527
Male, age 74, both hemispheres
252.4
2082
Female, age 91, right hemisphere
229.0
2749
Male, age 80, left hemisphere
169.3
1873
Female, age 85, both hemispheres
168.5
2045
Male, age 76, both hemispheres
80.0
Hippocampus, CA2 nTPM: 218.0
2437
Female, age 94, left hemisphere
271.6
1940
Female, age 85, left hemisphere
255.3
1892
Male, age 76, both hemispheres
244.6
2249
Male, age 74, both hemispheres
192.5
2113
Female, age 91, right hemisphere
180.2
1963
Male, age 80, left hemisphere
164.0
Hippocampus, CA3 nTPM: 139.7
2861
Female, age 67, both hemispheres
222.5
1867
Male, age 76, both hemispheres
175.3
2436
Male, age 74, both hemispheres
151.2
1891
Female, age 85, both hemispheres
148.8
2620
Female, age 94, left hemisphere
80.2
2137
Male, age 80, left hemisphere
60.3
Parahippocampal cortex nTPM: 261.5
2250
Female, age 67, right hemisphere
355.3
2245
Female, age 91, both hemispheres
336.0
1933
Female, age 85, both hemispheres
314.6
1990
Female, age 91, right hemisphere
297.8
2622
Female, age 67, right hemisphere
276.7
1850
Male, age 80, both hemispheres
264.8
2692
Male, age 74, both hemispheres
257.5
2693
Female, age 94, both hemispheres
192.8
2532
Female, age 72, left hemisphere
171.5
2018
Male, age 76, both hemispheres
148.1
Perirhinal gyrus nTPM: 320.1
1847
Female, age 91, left hemisphere
603.3
2521
Female, age 94, right hemisphere
289.7
1794
Male, age 80, right hemisphere
288.8
1841
Female, age 85, right hemisphere
258.5
2848
Male, age 76, right hemisphere
160.1
Subiculum nTPM: 193.3
2438
Female, age 94, left hemisphere
295.8
2619
Male, age 74, both hemispheres
292.6
1977
Female, age 85, both hemispheres
232.8
1901
Male, age 80, both hemispheres
161.9
2729
Female, age 91, right hemisphere
101.8
2042
Male, age 76, both hemispheres
75.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
253.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 253.5
Samples: 197
Max nTPM: 875.9
Min nTPM: 25.0
Std nTPM: 172.3
Median nTPM: 207.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
875.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
802.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
761.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
758.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
738.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
651.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
645.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
645.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
635.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
610.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
592.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
578.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
574.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
566.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
539.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
516.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
508.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
507.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
484.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
483.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
480.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
468.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
463.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
458.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
457.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
454.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
454.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
453.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
453.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
451.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
450.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
441.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
440.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
436.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
434.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
427.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
421.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
415.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
410.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
398.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
387.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
387.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
385.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
374.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
371.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
357.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
356.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
355.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
350.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
349.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
348.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
347.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
337.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
321.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
320.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
319.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
316.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
314.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
313.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
307.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
306.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
302.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
297.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
296.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
296.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
292.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
289.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
286.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
274.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
272.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
271.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
260.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
258.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
253.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
252.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
248.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
245.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
243.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
243.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
241.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
237.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
236.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
234.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
234.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
234.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
233.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
228.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
227.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
224.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
223.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
219.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
215.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
215.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
214.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
214.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
213.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
208.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
207.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
207.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
206.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
205.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
202.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
201.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
199.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
198.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
198.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
197.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
193.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
192.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
190.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
188.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
187.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
184.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
182.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
182.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
181.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
180.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
178.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
175.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
174.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
167.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
166.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
163.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
158.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
157.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
156.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
152.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
152.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
151.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
150.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
148.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
148.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
147.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
145.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
139.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
138.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
137.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
136.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
135.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
134.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
134.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
134.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
133.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
127.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
125.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
124.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
123.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
122.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
121.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
121.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
120.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
120.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
118.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
117.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
116.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
110.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
110.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
109.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
107.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
103.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
103.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
101.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
99.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
99.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
99.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
98.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
96.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
95.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
94.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
89.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
87.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
84.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
84.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
84.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
81.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
79.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
77.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
76.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
72.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
71.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
69.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
68.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
65.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
62.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
60.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
60.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
57.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
55.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
50.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
50.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
45.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
39.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
36.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
35.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
30.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
25.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
25.0
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 6.1
Samples: 4
Max nTPM: 7.5
Min nTPM: 4.7
Sample A
Male
5.6
Sample B
Male
4.7
Sample C
Female
7.5
Sample D
Female
6.7
Hippocampal formation nTPM: 9.8
Samples: 4
Max nTPM: 11.2
Min nTPM: 8.0
Sample A
Male
10.3
Sample B
Male
8.0
Sample C
Female
9.8
Sample D
Female
11.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.