BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.1 nTPM
HPA Brain:0.7 nTPM
GTEx:0.1 nTPM
Pig:0.2 nTPM
Mouse:1.5 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 0.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.4
1854 Male, age 80, left hemisphere 0.5
2290 Female, age 72, unknown 0.5
1781 Male, age 74, unknown 0.4
2289 Male, age 61, right hemisphere 0.4
2846 Female, age 79, unknown 0.4
1857 Female, age 85, left hemisphere 0.3
2288 Male, age 75, left hemisphere 0.3
2481 Female, age 94, left hemisphere 0.2
Globus pallidus, externus
nTPM: 0.3
2395 Male, age 75, both hemispheres 0.3
2646 Male, age 61, right hemisphere 0.3
2772 Female, age 79, unknown 0.3
1996 Male, age 80, right hemisphere 0.2
2567 Female, age 72, unknown 0.2
Globus pallidus, internus
nTPM: 0.3
2566 Female, age 72, unknown 0.4
2111 Female, age 85, right hemisphere 0.3
2287 Male, age 75, right hemisphere 0.3
2483 Female, age 94, right hemisphere 0.3
1818 Male, age 74, unknown 0.2
2778 Female, age 91, both hemispheres 0.2
2037 Male, age 80, right hemisphere 0.1
Nucleus accumbens
nTPM: 0.4
1783 Male, age 74, unknown 0.5
2698 Female, age 72, unknown 0.5
2824 Male, age 61, right hemisphere 0.5
2286 Male, age 75, left hemisphere 0.4
1806 Female, age 85, left hemisphere 0.3
1856 Female, age 91, right hemisphere 0.3
2391 Female, age 94, left hemisphere 0.3
2732 Male, age 80, right hemisphere 0.3
Nucleus basalis of Meynert
nTPM: 0.3
2393 Male, age 80, right hemisphere 0.4
2821 Male, age 75, both hemispheres 0.3
2484 Female, age 94, left hemisphere 0.2
2569 Male, age 61, both hemispheres 0.2
Nucleus of the diagonal band
nTPM: 0.7
2775 Male, age 80, right hemisphere 0.9
1812 Female, age 91, both hemispheres 0.7
2029 Male, age 61, right hemisphere 0.7
2195 Female, age 85, both hemispheres 0.7
1979 Male, age 74, unknown 0.3
Putamen
nTPM: 0.4
1829 Male, age 74, unknown 0.4
2466 Female, age 79, unknown 0.4
2489 Female, age 72, unknown 0.4
1838 Male, age 80, right hemisphere 0.3
1937 Female, age 91, right hemisphere 0.3
2482 Female, age 94, left hemisphere 0.3
2647 Male, age 75, left hemisphere 0.3
Septal nuclei
nTPM: 0.5
2031 Female, age 72, unknown 0.9
2009 Female, age 91, both hemispheres 0.5
2629 Female, age 94, right hemisphere 0.5
1960 Male, age 74, unknown 0.4
2059 Female, age 85, both hemispheres 0.3
2199 Male, age 80, right hemisphere 0.3
2394 Male, age 61, left hemisphere 0.2
Stria terminalis, bed nucleus
nTPM: 0.6
2486 Female, age 94, both hemispheres 0.8
1974 Female, age 91, both hemispheres 0.7
2201 Male, age 74, unknown 0.2

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 0.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.1
Samples: 246

Max nTPM: 1.0
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 0.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 0.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 0.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 0.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 0.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 0.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 0.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 0.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 0.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 0.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.1
Samples: 246

Max nTPM: 0.7
Min nTPM: 0.0
Std nTPM: 0.0
Median nTPM: 0.0
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 0.7
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 0.5
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 0.4
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 0.4
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 0.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 0.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 0.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 0.3
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 0.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 0.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 0.2
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Brain - Putamen (basal ganglia)
Average nTPM: 0.1
Samples: 205

Max nTPM: 1.1
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 1.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 1.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 0.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 0.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 0.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 0.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 0.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 0.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 0.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 0.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 0.2
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BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 0.2
Pig sample Sample description nTPM
Caudate
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.2
Sample C Male 0.1
Sample D Male 0.0
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.6
Sample D Male 0.1
Ventral pallidum
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.2
Sample C Male 0.4
Sample D Male 0.0

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 1.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.1
Samples: 4

Max nTPM: 1.2
Min nTPM: 1.0
Sample A Male 1.0
Sample B Male 1.2
Sample C Female 1.1
Sample D Female 1.1
Septum
nTPM: 1.6
Samples: 4

Max nTPM: 3.2
Min nTPM: 0.2
Sample A Male 1.8
Sample B Male 0.2
Sample C Female 3.2
Sample D Female 1.0
Ventral forebrain
nTPM: 1.0
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.9
Sample A Male 1.1
Sample B Male 1.0
Sample C Female 0.9
Sample D Female 1.1

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
69257468 Antisense, RP_050331_02_F09, Mouse strain C57BL/6J (56 days, male) 0.3
74724649 Antisense, RP_060220_04_A08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
69257468 Antisense, RP_050331_02_F09, Mouse strain C57BL/6J (56 days, male) 0.1
74724649 Antisense, RP_060220_04_A08, Mouse strain C57BL/6J (56 days, male) 0.1

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