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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
1.8
473
Tumor
1.5
911
Tumor
1.3
527
Tumor
1.2
665
Tumor
1.2
743
Tumor
1.2
363
Tumor
1.1
724
Normal
1.1
131
Tumor
0.9
367
Tumor
0.9
967
Tumor
0.9
435
Tumor
0.9
537
Tumor
0.9
965
Tumor
0.8
515
Tumor
0.8
221
Tumor
0.8
413
Tumor
0.8
285
Tumor
0.7
227
Tumor
0.7
881
Tumor
0.7
958
Normal
0.7
451
Tumor
0.7
923
Tumor
0.7
523
Tumor
0.7
968
Normal
0.7
647
Tumor
0.7
964
Normal
0.7
737
Tumor
0.6
685
Tumor
0.6
616
Normal
0.6
858
Normal
0.6
851
Tumor
0.6
351
Tumor
0.6
571
Tumor
0.6
525
Tumor
0.5
777
Tumor
0.5
357
Tumor
0.5
963
Tumor
0.5
383
Tumor
0.5
471
Tumor
0.5
976
Normal
0.5
663
Tumor
0.5
271
Tumor
0.5
395
Tumor
0.5
877
Tumor
0.5
1031
Tumor
0.5
713
Tumor
0.5
741
Tumor
0.5
815
Tumor
0.4
553
Tumor
0.4
328
Normal
0.4
483
Tumor
0.4
421
Tumor
0.4
231
Tumor
0.4
354
Normal
0.4
387
Tumor
0.4
431
Tumor
0.4
921
Tumor
0.4
914
Normal
0.4
975
Tumor
0.4
277
Tumor
0.4
391
Tumor
0.4
286
Normal
0.4
125
Tumor
0.4
491
Tumor
0.4
1021
Tumor
0.3
615
Tumor
0.3
636
Normal
0.3
415
Tumor
0.3
915
Tumor
0.3
461
Tumor
0.3
341
Tumor
0.3
533
Tumor
0.3
416
Normal
0.3
756
Normal
0.3
353
Tumor
0.3
883
Tumor
0.3
212
Normal
0.3
331
Tumor
0.3
983
Tumor
0.3
1015
Tumor
0.3
1013
Tumor
0.3
516
Normal
0.3
388
Normal
0.3
857
Tumor
0.3
425
Tumor
0.3
313
Tumor
0.3
567
Tumor
0.3
534
Normal
0.2
393
Tumor
0.2
918
Normal
0.2
352
Normal
0.2
232
Normal
0.2
723
Tumor
0.2
977
Tumor
0.2
573
Tumor
0.2
327
Tumor
0.2
426
Normal
0.2
661
Tumor
0.2
364
Normal
0.2
526
Normal
0.2
925
Tumor
0.2
487
Tumor
0.2
1016
Normal
0.2
755
Tumor
0.2
477
Tumor
0.2
628
Normal
0.2
884
Normal
0.1
642
Normal
0.1
517
Tumor
0.1
785
Tumor
0.1
145
Tumor
0.1
912
Normal
0.1
463
Tumor
0.1
412
Normal
0.1
518
Normal
0.1
356
Normal
0.1
528
Normal
0.1
343
Tumor
0.1
852
Normal
0.1
422
Normal
0.1
423
Tumor
0.1
778
Normal
0.1
1025
Tumor
0.1
355
Tumor
0.1
258
Normal
0.1
627
Tumor
0.1
641
Tumor
0.1
635
Tumor
0.1
786
Normal
0.1
1014
Normal
0.1
484
Normal
0.1
617
Tumor
0.1
818
Normal
0.1
427
Tumor
0.1
462
Normal
0.1
618
Normal
0.1
428
Normal
0.1
824
Normal
0.1
278
Normal
0.1
978
Normal
0.1
882
Normal
0.1
358
Normal
0.1
312
Normal
0.1
268
Normal
0.1
344
Normal
0.1
424
Normal
0.1
545
Tumor
0.1
365
Tumor
0.1
742
Normal
0.0
267
Tumor
0.0
1032
Normal
0.0
982
Normal
0.0
664
Normal
0.0
715
Tumor
0.0
361
Tumor
0.0
1026
Normal
0.0
113
Tumor
0.0
284
Normal
0.0
392
Normal
0.0
228
Normal
0.0
332
Normal
0.0
444
Normal
0.0
817
Tumor
0.0
666
Normal
0.0
984
Normal
0.0
924
Normal
0.0
563
Tumor
0.0
482
Normal
0.0
648
Normal
0.0
966
Normal
0.0
272
Normal
0.0
297
Tumor
0.0
497
Tumor
0.0
546
Normal
0.0
414
Normal
0.0
746
Normal
0.0
223
Tumor
0.0
257
Tumor
0.0
922
Normal
0.0
1028
Normal
0.0
913
Tumor
0.0
396
Normal
-0.1
1042
Normal
-0.1
813
Tumor
-0.1
745
Tumor
-0.1
342
Normal
-0.1
981
Tumor
-0.1
436
Normal
-0.1
112
Tumor
-0.1
217
Tumor
-0.1
455
Tumor
-0.1
137
Tumor
-0.1
727
Tumor
-0.1
662
Normal
-0.1
432
Normal
-0.1
224
Normal
-0.1
472
Normal
-0.1
262
Normal
-0.1
494
Normal
-0.1
474
Normal
-0.1
686
Normal
-0.1
816
Normal
-0.1
672
Normal
-0.1
298
Normal
-0.1
114
Normal
-0.1
314
Normal
-0.1
191
Tumor
-0.1
111
Normal
-0.1
141
Tumor
-0.1
386
Normal
-0.1
957
Tumor
-0.1
452
Normal
-0.1
917
Tumor
-0.1
311
Tumor
-0.1
1027
Tumor
-0.1
878
Normal
-0.1
514
Normal
-0.2
128
Normal
-0.2
366
Normal
-0.2
261
Tumor
-0.2
411
Tumor
-0.2
722
Normal
-0.2
524
Normal
-0.2
558
Normal
-0.2
394
Normal
-0.2
926
Normal
-0.2
574
Normal
-0.2
538
Normal
-0.2
554
Normal
-0.2
1041
Tumor
-0.2
564
Normal
-0.2
814
Normal
-0.2
135
Tumor
-0.2
481
Tumor
-0.2
124
Normal
-0.2
466
Normal
-0.2
362
Normal
-0.2
142
Normal
-0.2
493
Tumor
-0.2
195
Tumor
-0.3
211
Tumor
-0.3
714
Normal
-0.3
384
Normal
-0.3
728
Normal
-0.3
498
Normal
-0.3
721
Tumor
-0.3
126
Normal
-0.3
464
Normal
-0.3
572
Normal
-0.3
568
Normal
-0.3
696
Normal
-0.3
716
Normal
-0.3
368
Normal
-0.3
443
Tumor
-0.3
671
Tumor
-0.3
283
Tumor
-0.3
222
Normal
-0.3
492
Normal
-0.4
456
Normal
-0.4
446
Normal
-0.4
375
Tumor
-0.4
127
Tumor
-0.4
433
Tumor
-0.4
132
Normal
-0.4
445
Tumor
-0.4
218
Normal
-0.4
385
Tumor
-0.4
738
Normal
-0.4
138
Normal
-0.4
376
Normal
-0.4
136
Normal
-0.4
823
Tumor
-0.4
488
Normal
-0.5
465
Tumor
-0.5
557
Tumor
-0.5
478
Normal
-0.5
916
Normal
-0.5
146
Normal
-0.5
1022
Normal
-0.5
214
Normal
-0.6
196
Normal
-0.6
695
Tumor
-0.6
467
Tumor
-0.7
468
Normal
-0.7
434
Normal
-0.7
213
Tumor
-0.7
513
Tumor
-0.8
192
Normal
-0.8
937
Tumor
N/A
938
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
1046
Normal
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
