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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAPH1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
47.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
34.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAPH1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
231
Samples
Sample
Description
TPM
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
47.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
36.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
36.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
30.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
28.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
1.0
695
Tumor
1.0
435
Tumor
0.9
517
Tumor
0.8
617
Tumor
0.8
977
Tumor
0.7
813
Tumor
0.7
357
Tumor
0.7
515
Tumor
0.7
147
Tumor
0.7
573
Tumor
0.7
227
Tumor
0.6
1043
Tumor
0.6
463
Tumor
0.6
786
Normal
0.5
571
Tumor
0.5
746
Normal
0.5
963
Tumor
0.5
884
Normal
0.5
277
Tumor
0.5
1032
Normal
0.5
1031
Tumor
0.4
742
Normal
0.4
257
Tumor
0.4
537
Tumor
0.4
112
Tumor
0.4
1027
Tumor
0.4
474
Normal
0.4
414
Normal
0.4
714
Normal
0.4
696
Normal
0.4
171
Tumor
0.4
518
Normal
0.4
648
Normal
0.4
1022
Normal
0.4
737
Tumor
0.4
824
Normal
0.4
487
Tumor
0.4
514
Normal
0.4
456
Normal
0.4
882
Normal
0.4
416
Normal
0.4
874
Normal
0.4
472
Normal
0.4
481
Tumor
0.4
912
Normal
0.4
868
Normal
0.4
867
Tumor
0.4
745
Tumor
0.4
866
Normal
0.3
482
Normal
0.3
952
Normal
0.3
431
Tumor
0.3
411
Tumor
0.3
921
Tumor
0.3
951
Tumor
0.3
918
Normal
0.3
484
Normal
0.3
1042
Normal
0.3
864
Normal
0.3
1026
Normal
0.3
464
Normal
0.3
723
Tumor
0.3
423
Tumor
0.3
428
Normal
0.3
1046
Normal
0.3
1013
Tumor
0.3
923
Tumor
0.3
462
Normal
0.3
312
Normal
0.3
964
Normal
0.3
778
Normal
0.3
756
Normal
0.3
328
Normal
0.3
627
Tumor
0.3
1014
Normal
0.3
516
Normal
0.3
738
Normal
0.3
852
Normal
0.3
436
Normal
0.3
477
Tumor
0.3
968
Normal
0.3
862
Normal
0.3
422
Normal
0.3
136
Normal
0.3
523
Tumor
0.2
341
Tumor
0.2
881
Tumor
0.2
132
Normal
0.2
271
Tumor
0.2
958
Normal
0.2
938
Normal
0.2
978
Normal
0.2
728
Normal
0.2
365
Tumor
0.2
662
Normal
0.2
567
Tumor
0.2
647
Tumor
0.2
858
Normal
0.2
455
Tumor
0.2
424
Normal
0.2
716
Normal
0.2
466
Normal
0.2
924
Normal
0.2
445
Tumor
0.2
956
Normal
0.2
272
Normal
0.2
955
Tumor
0.2
1025
Tumor
0.2
755
Tumor
0.2
618
Normal
0.2
982
Normal
0.2
114
Normal
0.2
818
Normal
0.2
526
Normal
0.2
546
Normal
0.2
554
Normal
0.2
148
Normal
0.2
528
Normal
0.2
1016
Normal
0.2
926
Normal
0.2
642
Normal
0.2
478
Normal
0.2
914
Normal
0.2
364
Normal
0.2
228
Normal
0.2
944
Normal
0.2
412
Normal
0.2
976
Normal
0.2
362
Normal
0.2
666
Normal
0.2
473
Tumor
0.2
284
Normal
0.2
448
Normal
0.2
785
Tumor
0.1
461
Tumor
0.1
873
Tumor
0.1
146
Normal
0.1
664
Normal
0.1
494
Normal
0.1
162
Normal
0.1
468
Normal
0.1
966
Normal
0.1
262
Normal
0.1
1045
Tumor
0.1
878
Normal
0.1
628
Normal
0.1
131
Tumor
0.1
533
Tumor
0.1
261
Tumor
0.1
415
Tumor
0.1
286
Normal
0.1
386
Normal
0.1
161
Tumor
0.1
558
Normal
0.1
432
Normal
0.1
922
Normal
0.1
564
Normal
0.1
327
Tumor
0.1
212
Normal
0.1
915
Tumor
0.1
534
Normal
0.1
356
Normal
0.1
574
Normal
0.1
138
Normal
0.1
358
Normal
0.1
698
Normal
0.1
361
Tumor
0.1
433
Tumor
0.1
421
Tumor
0.1
376
Normal
0.1
1044
Normal
0.1
258
Normal
0.1
366
Normal
0.1
222
Normal
0.1
641
Tumor
0.1
172
Normal
0.1
814
Normal
0.1
713
Tumor
0.1
1028
Normal
0.1
278
Normal
0.1
232
Normal
0.1
483
Tumor
0.1
743
Tumor
0.1
616
Normal
0.1
572
Normal
0.1
298
Normal
0.1
916
Normal
0.1
816
Normal
0.1
943
Tumor
0.1
465
Tumor
0.1
354
Normal
0.0
196
Normal
0.0
127
Tumor
0.0
954
Normal
0.0
636
Normal
0.0
224
Normal
0.0
823
Tumor
0.0
111
Normal
0.0
452
Normal
0.0
355
Tumor
0.0
563
Tumor
0.0
126
Normal
0.0
396
Normal
0.0
686
Normal
0.0
722
Normal
0.0
967
Tumor
0.0
525
Tumor
0.0
975
Tumor
0.0
857
Tumor
0.0
697
Tumor
0.0
865
Tumor
0.0
488
Normal
0.0
192
Normal
0.0
142
Normal
0.0
568
Normal
0.0
145
Tumor
0.0
128
Normal
0.0
1021
Tumor
0.0
188
Normal
0.0
492
Normal
0.0
426
Normal
0.0
363
Tumor
0.0
214
Normal
0.0
353
Tumor
0.0
721
Tumor
0.0
744
Normal
0.0
984
Normal
-0.1
297
Tumor
-0.1
384
Normal
-0.1
983
Tumor
-0.1
727
Tumor
-0.1
394
Normal
-0.1
672
Normal
-0.1
314
Normal
-0.1
141
Tumor
-0.1
267
Tumor
-0.1
186
Normal
-0.1
218
Normal
-0.1
741
Tumor
-0.1
777
Tumor
-0.1
392
Normal
-0.1
425
Tumor
-0.1
352
Normal
-0.1
538
Normal
-0.1
427
Tumor
-0.1
615
Tumor
-0.1
498
Normal
-0.1
342
Normal
-0.1
527
Tumor
-0.1
953
Tumor
-0.1
447
Tumor
-0.2
125
Tumor
-0.2
444
Normal
-0.2
553
Tumor
-0.2
446
Normal
-0.2
124
Normal
-0.2
368
Normal
-0.2
268
Normal
-0.2
817
Tumor
-0.2
513
Tumor
-0.2
313
Tumor
-0.2
536
Normal
-0.2
524
Normal
-0.2
343
Tumor
-0.2
663
Tumor
-0.2
434
Normal
-0.3
388
Normal
-0.3
137
Tumor
-0.3
471
Tumor
-0.3
1041
Tumor
-0.3
185
Tumor
-0.3
883
Tumor
-0.3
344
Normal
-0.3
965
Tumor
-0.3
213
Tumor
-0.3
187
Tumor
-0.3
285
Tumor
-0.3
497
Tumor
-0.3
913
Tumor
-0.4
332
Normal
-0.4
135
Tumor
-0.4
383
Tumor
-0.4
393
Tumor
-0.4
1015
Tumor
-0.4
113
Tumor
-0.4
911
Tumor
-0.4
413
Tumor
-0.4
545
Tumor
-0.4
221
Tumor
-0.4
493
Tumor
-0.5
861
Tumor
-0.5
217
Tumor
-0.5
387
Tumor
-0.5
311
Tumor
-0.5
283
Tumor
-0.5
195
Tumor
-0.5
635
Tumor
-0.5
191
Tumor
-0.5
981
Tumor
-0.5
223
Tumor
-0.5
851
Tumor
-0.5
331
Tumor
-0.5
937
Tumor
-0.5
123
Tumor
-0.5
715
Tumor
-0.6
557
Tumor
-0.6
491
Tumor
-0.6
957
Tumor
-0.6
443
Tumor
-0.6
877
Tumor
-0.6
724
Normal
-0.7
231
Tumor
-0.7
671
Tumor
-0.7
917
Tumor
-0.7
467
Tumor
-0.7
391
Tumor
-0.8
535
Tumor
-0.8
925
Tumor
-0.8
665
Tumor
-0.8
375
Tumor
-0.9
351
Tumor
-0.9
367
Tumor
-0.9
815
Tumor
-1.0
661
Tumor
-1.0
451
Tumor
-1.0
395
Tumor
-1.0
685
Tumor
-1.1
211
Tumor
-1.2
385
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
