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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COMMD1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
62.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
61.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
59.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
57.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
56.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
49.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
46.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
44.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
43.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
43.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
43.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
40.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
40.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
37.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
36.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
36.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
36.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
36.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
36.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
35.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
35.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
34.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
34.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
34.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
32.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
32.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
32.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
31.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
31.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
30.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
29.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
29.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
28.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
27.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
25.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COMMD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.9
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
43.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
32.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
31.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
313
Tumor
0.7
1013
Tumor
0.6
981
Tumor
0.5
536
Normal
0.3
368
Normal
0.3
376
Normal
0.3
1027
Tumor
0.3
125
Tumor
0.3
432
Normal
0.3
358
Normal
0.3
944
Normal
0.3
362
Normal
0.3
426
Normal
0.3
663
Tumor
0.3
617
Tumor
0.3
342
Normal
0.3
697
Tumor
0.3
534
Normal
0.3
528
Normal
0.2
546
Normal
0.2
352
Normal
0.2
394
Normal
0.2
1026
Normal
0.2
755
Tumor
0.2
1025
Tumor
0.2
922
Normal
0.2
356
Normal
0.2
685
Tumor
0.2
627
Tumor
0.2
616
Normal
0.2
232
Normal
0.2
967
Tumor
0.2
386
Normal
0.2
924
Normal
0.2
966
Normal
0.2
938
Normal
0.2
354
Normal
0.2
921
Tumor
0.2
926
Normal
0.2
451
Tumor
0.2
365
Tumor
0.2
756
Normal
0.2
918
Normal
0.2
344
Normal
0.2
491
Tumor
0.2
815
Tumor
0.2
272
Normal
0.2
126
Normal
0.2
1022
Normal
0.2
1021
Tumor
0.2
862
Normal
0.2
943
Tumor
0.2
1015
Tumor
0.2
968
Normal
0.2
396
Normal
0.2
492
Normal
0.2
954
Normal
0.2
636
Normal
0.2
488
Normal
0.2
738
Normal
0.2
147
Tumor
0.2
366
Normal
0.2
136
Normal
0.2
384
Normal
0.2
498
Normal
0.1
727
Tumor
0.1
956
Normal
0.1
976
Normal
0.1
915
Tumor
0.1
964
Normal
0.1
484
Normal
0.1
916
Normal
0.1
487
Tumor
0.1
494
Normal
0.1
813
Tumor
0.1
171
Tumor
0.1
132
Normal
0.1
482
Normal
0.1
698
Normal
0.1
864
Normal
0.1
412
Normal
0.1
745
Tumor
0.1
513
Tumor
0.1
1028
Normal
0.1
1042
Normal
0.1
364
Normal
0.1
212
Normal
0.1
262
Normal
0.1
618
Normal
0.1
1016
Normal
0.1
224
Normal
0.1
284
Normal
0.1
914
Normal
0.1
868
Normal
0.1
746
Normal
0.1
1046
Normal
0.1
778
Normal
0.1
696
Normal
0.1
148
Normal
0.1
953
Tumor
0.1
538
Normal
0.1
628
Normal
0.1
686
Normal
0.1
161
Tumor
0.1
214
Normal
0.1
473
Tumor
0.1
137
Tumor
0.1
124
Normal
0.1
722
Normal
0.1
648
Normal
0.1
415
Tumor
0.1
642
Normal
0.1
1044
Normal
0.1
554
Normal
0.1
436
Normal
0.1
958
Normal
0.1
186
Normal
0.1
311
Tumor
0.1
222
Normal
0.1
227
Tumor
0.1
172
Normal
0.1
363
Tumor
0.1
714
Normal
0.1
218
Normal
0.1
138
Normal
0.1
217
Tumor
0.1
1031
Tumor
0.1
666
Normal
0.1
466
Normal
0.1
978
Normal
0.1
128
Normal
0.1
162
Normal
0.1
858
Normal
0.1
448
Normal
0.1
917
Tumor
0.1
873
Tumor
0.1
925
Tumor
0.1
388
Normal
0.1
1014
Normal
0.1
456
Normal
0.1
984
Normal
0.1
383
Tumor
0.1
1032
Normal
0.1
777
Tumor
0.1
724
Normal
0.1
472
Normal
0.1
537
Tumor
0.1
527
Tumor
0.1
395
Tumor
0.1
314
Normal
0.1
468
Normal
0.1
421
Tumor
0.1
188
Normal
0.1
955
Tumor
0.1
446
Normal
0.1
267
Tumor
0.0
478
Normal
0.0
452
Normal
0.0
982
Normal
0.0
185
Tumor
0.0
131
Tumor
0.0
127
Tumor
0.0
228
Normal
0.0
414
Normal
0.0
467
Tumor
0.0
814
Normal
0.0
615
Tumor
0.0
187
Tumor
0.0
261
Tumor
0.0
195
Tumor
0.0
416
Normal
0.0
716
Normal
0.0
361
Tumor
0.0
518
Normal
0.0
723
Tumor
0.0
464
Normal
0.0
481
Tumor
0.0
816
Normal
0.0
387
Tumor
0.0
113
Tumor
0.0
817
Tumor
0.0
695
Tumor
0.0
422
Normal
0.0
567
Tumor
0.0
455
Tumor
0.0
558
Normal
0.0
553
Tumor
0.0
824
Normal
0.0
328
Normal
0.0
571
Tumor
0.0
662
Normal
0.0
516
Normal
0.0
411
Tumor
0.0
526
Normal
0.0
114
Normal
0.0
524
Normal
0.0
258
Normal
0.0
912
Normal
0.0
392
Normal
0.0
391
Tumor
0.0
257
Tumor
0.0
428
Normal
0.0
434
Normal
0.0
447
Tumor
0.0
375
Tumor
0.0
462
Normal
0.0
271
Tumor
0.0
635
Tumor
0.0
664
Normal
0.0
332
Normal
0.0
286
Normal
0.0
952
Normal
0.0
672
Normal
0.0
786
Normal
0.0
1043
Tumor
0.0
192
Normal
0.0
965
Tumor
0.0
852
Normal
0.0
913
Tumor
0.0
863
Tumor
0.0
882
Normal
0.0
1045
Tumor
0.0
525
Tumor
0.0
737
Tumor
0.0
665
Tumor
0.0
424
Normal
0.0
123
Tumor
-0.1
327
Tumor
-0.1
474
Normal
-0.1
744
Normal
-0.1
923
Tumor
-0.1
431
Tumor
-0.1
196
Normal
-0.1
298
Normal
-0.1
866
Normal
-0.1
443
Tumor
-0.1
865
Tumor
-0.1
977
Tumor
-0.1
721
Tumor
-0.1
135
Tumor
-0.1
785
Tumor
-0.1
142
Normal
-0.1
728
Normal
-0.1
874
Normal
-0.1
351
Tumor
-0.1
911
Tumor
-0.1
477
Tumor
-0.1
647
Tumor
-0.1
884
Normal
-0.1
533
Tumor
-0.1
413
Tumor
-0.1
268
Normal
-0.1
357
Tumor
-0.1
963
Tumor
-0.1
818
Normal
-0.1
231
Tumor
-0.1
331
Tumor
-0.1
823
Tumor
-0.1
937
Tumor
-0.1
367
Tumor
-0.1
514
Normal
-0.1
568
Normal
-0.1
283
Tumor
-0.1
564
Normal
-0.1
111
Normal
-0.1
425
Tumor
-0.1
278
Normal
-0.1
742
Normal
-0.1
277
Tumor
-0.1
951
Tumor
-0.1
497
Tumor
-0.1
444
Normal
-0.1
957
Tumor
-0.2
353
Tumor
-0.2
851
Tumor
-0.2
393
Tumor
-0.2
221
Tumor
-0.2
743
Tumor
-0.2
112
Tumor
-0.2
297
Tumor
-0.2
471
Tumor
-0.2
465
Tumor
-0.2
861
Tumor
-0.2
1041
Tumor
-0.2
572
Normal
-0.2
713
Tumor
-0.2
341
Tumor
-0.2
878
Normal
-0.2
535
Tumor
-0.2
867
Tumor
-0.2
285
Tumor
-0.2
435
Tumor
-0.2
463
Tumor
-0.2
671
Tumor
-0.2
461
Tumor
-0.2
545
Tumor
-0.2
574
Normal
-0.2
145
Tumor
-0.2
146
Normal
-0.2
741
Tumor
-0.2
877
Tumor
-0.3
427
Tumor
-0.3
211
Tumor
-0.3
715
Tumor
-0.3
983
Tumor
-0.3
641
Tumor
-0.3
213
Tumor
-0.3
343
Tumor
-0.3
557
Tumor
-0.3
857
Tumor
-0.3
975
Tumor
-0.3
515
Tumor
-0.3
191
Tumor
-0.3
881
Tumor
-0.3
312
Normal
-0.3
223
Tumor
-0.4
355
Tumor
-0.4
445
Tumor
-0.4
141
Tumor
-0.4
523
Tumor
-0.4
483
Tumor
-0.4
883
Tumor
-0.4
423
Tumor
-0.4
493
Tumor
-0.4
433
Tumor
-0.4
517
Tumor
-0.4
385
Tumor
-0.5
661
Tumor
-0.5
573
Tumor
-0.5
563
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
