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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KDM2A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
57.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KDM2A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.1
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
59.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
58.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
48.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
42.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
40.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
39.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
39.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
38.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
36.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
36.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.6
112
Tumor
1.6
873
Tumor
1.5
883
Tumor
1.3
211
Tumor
1.2
135
Tumor
1.1
425
Tumor
1.0
161
Tumor
0.7
951
Tumor
0.7
427
Tumor
0.7
535
Tumor
0.7
313
Tumor
0.6
267
Tumor
0.6
123
Tumor
0.6
925
Tumor
0.5
463
Tumor
0.5
635
Tumor
0.5
497
Tumor
0.5
127
Tumor
0.5
351
Tumor
0.5
661
Tumor
0.5
435
Tumor
0.5
533
Tumor
0.5
367
Tumor
0.5
431
Tumor
0.5
217
Tumor
0.5
341
Tumor
0.5
493
Tumor
0.4
113
Tumor
0.4
741
Tumor
0.4
685
Tumor
0.4
937
Tumor
0.4
641
Tumor
0.4
447
Tumor
0.4
647
Tumor
0.4
383
Tumor
0.4
357
Tumor
0.4
487
Tumor
0.4
983
Tumor
0.4
445
Tumor
0.4
923
Tumor
0.4
451
Tumor
0.4
443
Tumor
0.4
815
Tumor
0.4
385
Tumor
0.4
411
Tumor
0.4
413
Tumor
0.4
737
Tumor
0.4
917
Tumor
0.3
977
Tumor
0.3
192
Normal
0.3
297
Tumor
0.3
813
Tumor
0.3
537
Tumor
0.3
361
Tumor
0.3
213
Tumor
0.3
391
Tumor
0.3
171
Tumor
0.3
467
Tumor
0.3
387
Tumor
0.3
483
Tumor
0.3
743
Tumor
0.3
814
Normal
0.3
191
Tumor
0.3
141
Tumor
0.3
366
Normal
0.3
147
Tumor
0.3
615
Tumor
0.3
963
Tumor
0.3
132
Normal
0.3
331
Tumor
0.3
865
Tumor
0.2
343
Tumor
0.2
221
Tumor
0.2
742
Normal
0.2
185
Tumor
0.2
146
Normal
0.2
465
Tumor
0.2
957
Tumor
0.2
138
Normal
0.2
477
Tumor
0.2
715
Tumor
0.2
423
Tumor
0.2
1013
Tumor
0.2
1031
Tumor
0.2
695
Tumor
0.2
721
Tumor
0.2
188
Normal
0.2
913
Tumor
0.2
911
Tumor
0.2
1027
Tumor
0.2
744
Normal
0.2
817
Tumor
0.2
186
Normal
0.2
1021
Tumor
0.2
636
Normal
0.2
311
Tumor
0.2
455
Tumor
0.2
375
Tumor
0.2
388
Normal
0.2
148
Normal
0.2
665
Tumor
0.2
545
Tumor
0.2
376
Normal
0.2
223
Tumor
0.2
136
Normal
0.2
955
Tumor
0.2
396
Normal
0.1
527
Tumor
0.1
471
Tumor
0.1
187
Tumor
0.1
384
Normal
0.1
415
Tumor
0.1
618
Normal
0.1
1041
Tumor
0.1
257
Tumor
0.1
195
Tumor
0.1
354
Normal
0.1
218
Normal
0.1
536
Normal
0.1
386
Normal
0.1
172
Normal
0.1
162
Normal
0.1
268
Normal
0.1
355
Tumor
0.1
298
Normal
0.1
517
Tumor
0.1
967
Tumor
0.1
424
Normal
0.1
271
Tumor
0.1
342
Normal
0.1
272
Normal
0.1
114
Normal
0.1
823
Tumor
0.1
434
Normal
0.1
145
Tumor
0.1
513
Tumor
0.1
214
Normal
0.1
365
Tumor
0.1
126
Normal
0.1
428
Normal
0.1
433
Tumor
0.1
125
Tumor
0.1
617
Tumor
0.1
525
Tumor
0.1
915
Tumor
0.1
746
Normal
0.1
358
Normal
0.1
444
Normal
0.1
478
Normal
0.0
362
Normal
0.0
738
Normal
0.0
352
Normal
0.0
491
Tumor
0.0
137
Tumor
0.0
943
Tumor
0.0
978
Normal
0.0
628
Normal
0.0
573
Tumor
0.0
131
Tumor
0.0
663
Tumor
0.0
472
Normal
0.0
414
Normal
0.0
314
Normal
0.0
422
Normal
0.0
232
Normal
0.0
627
Tumor
0.0
393
Tumor
0.0
392
Normal
0.0
553
Tumor
0.0
261
Tumor
0.0
368
Normal
0.0
728
Normal
0.0
745
Tumor
0.0
563
Tumor
0.0
426
Normal
0.0
526
Normal
0.0
277
Tumor
0.0
966
Normal
0.0
858
Normal
0.0
432
Normal
0.0
877
Tumor
0.0
124
Normal
0.0
724
Normal
0.0
867
Tumor
0.0
262
Normal
0.0
436
Normal
0.0
716
Normal
0.0
756
Normal
0.0
332
Normal
0.0
727
Tumor
0.0
523
Tumor
0.0
857
Tumor
0.0
671
Tumor
0.0
514
Normal
0.0
777
Tumor
0.0
1045
Tumor
0.0
851
Tumor
0.0
714
Normal
0.0
921
Tumor
0.0
421
Tumor
0.0
285
Tumor
0.0
222
Normal
0.0
258
Normal
0.0
698
Normal
0.0
672
Normal
0.0
1022
Normal
0.0
666
Normal
0.0
344
Normal
0.0
278
Normal
0.0
912
Normal
0.0
723
Tumor
0.0
786
Normal
0.0
571
Tumor
0.0
572
Normal
0.0
394
Normal
0.0
1014
Normal
-0.1
328
Normal
-0.1
196
Normal
-0.1
755
Tumor
-0.1
1015
Tumor
-0.1
283
Tumor
-0.1
142
Normal
-0.1
686
Normal
-0.1
461
Tumor
-0.1
231
Tumor
-0.1
353
Tumor
-0.1
862
Normal
-0.1
481
Tumor
-0.1
558
Normal
-0.1
882
Normal
-0.1
564
Normal
-0.1
557
Tumor
-0.1
1046
Normal
-0.1
1043
Tumor
-0.1
818
Normal
-0.1
984
Normal
-0.1
111
Normal
-0.1
1042
Normal
-0.1
922
Normal
-0.1
312
Normal
-0.1
981
Tumor
-0.1
926
Normal
-0.1
1044
Normal
-0.1
327
Tumor
-0.1
518
Normal
-0.1
884
Normal
-0.1
662
Normal
-0.1
568
Normal
-0.1
975
Tumor
-0.1
356
Normal
-0.1
224
Normal
-0.1
664
Normal
-0.1
982
Normal
-0.1
364
Normal
-0.1
713
Tumor
-0.1
492
Normal
-0.1
1032
Normal
-0.1
722
Normal
-0.1
642
Normal
-0.1
446
Normal
-0.1
696
Normal
-0.1
416
Normal
-0.1
1016
Normal
-0.1
852
Normal
-0.1
128
Normal
-0.1
785
Tumor
-0.1
482
Normal
-0.1
953
Tumor
-0.1
914
Normal
-0.1
1026
Normal
-0.1
916
Normal
-0.1
462
Normal
-0.1
881
Tumor
-0.1
956
Normal
-0.1
861
Tumor
-0.1
944
Normal
-0.1
474
Normal
-0.1
816
Normal
-0.1
227
Tumor
-0.1
976
Normal
-0.1
494
Normal
-0.1
878
Normal
-0.1
534
Normal
-0.1
616
Normal
-0.1
524
Normal
-0.1
515
Tumor
-0.2
363
Tumor
-0.2
954
Normal
-0.2
648
Normal
-0.2
918
Normal
-0.2
412
Normal
-0.2
538
Normal
-0.2
938
Normal
-0.2
554
Normal
-0.2
824
Normal
-0.2
874
Normal
-0.2
516
Normal
-0.2
448
Normal
-0.2
546
Normal
-0.2
778
Normal
-0.2
395
Tumor
-0.2
488
Normal
-0.2
924
Normal
-0.2
456
Normal
-0.2
574
Normal
-0.2
968
Normal
-0.2
965
Tumor
-0.2
1025
Tumor
-0.2
952
Normal
-0.2
528
Normal
-0.2
452
Normal
-0.2
464
Normal
-0.2
964
Normal
-0.2
228
Normal
-0.2
697
Tumor
-0.2
468
Normal
-0.2
284
Normal
-0.2
1028
Normal
-0.3
866
Normal
-0.3
958
Normal
-0.3
466
Normal
-0.3
212
Normal
-0.3
864
Normal
-0.3
498
Normal
-0.3
484
Normal
-0.3
868
Normal
-0.3
567
Tumor
-0.4
863
Tumor
-0.4
286
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
