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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
294.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
86.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
62.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
46.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
41.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
231
Samples
Sample
Description
TPM
DO48733
0 years, male, NA, stage:2, alive, 600 days
462.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
367.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
313.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
217.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
152.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
140.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
120.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
99.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
95.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
92.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
85.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
60.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
52.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
47.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
46.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
43.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
40.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
39.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
38.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
37.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
36.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.0
695
Tumor
1.0
112
Tumor
0.8
127
Tumor
0.8
715
Tumor
0.6
571
Tumor
0.5
553
Tumor
0.5
567
Tumor
0.5
663
Tumor
0.5
161
Tumor
0.5
873
Tumor
0.5
1041
Tumor
0.5
123
Tumor
0.4
883
Tumor
0.4
471
Tumor
0.4
443
Tumor
0.4
823
Tumor
0.4
487
Tumor
0.4
433
Tumor
0.3
911
Tumor
0.3
435
Tumor
0.3
965
Tumor
0.3
977
Tumor
0.3
963
Tumor
0.3
493
Tumor
0.2
395
Tumor
0.2
557
Tumor
0.2
445
Tumor
0.2
415
Tumor
0.2
477
Tumor
0.2
533
Tumor
0.2
937
Tumor
0.2
223
Tumor
0.2
925
Tumor
0.2
917
Tumor
0.2
913
Tumor
0.1
641
Tumor
0.1
538
Normal
0.1
191
Tumor
0.1
685
Tumor
0.1
665
Tumor
0.1
473
Tumor
0.1
617
Tumor
0.1
423
Tumor
0.1
537
Tumor
0.1
483
Tumor
0.1
488
Normal
0.1
185
Tumor
0.1
635
Tumor
0.1
385
Tumor
0.1
813
Tumor
0.1
217
Tumor
0.1
267
Tumor
0.1
332
Normal
0.1
877
Tumor
0.1
286
Normal
0.1
497
Tumor
0.1
171
Tumor
0.1
224
Normal
0.1
375
Tumor
0.0
976
Normal
0.0
355
Tumor
0.0
525
Tumor
0.0
491
Tumor
0.0
498
Normal
0.0
1044
Normal
0.0
145
Tumor
0.0
227
Tumor
0.0
957
Tumor
0.0
228
Normal
0.0
982
Normal
0.0
351
Tumor
0.0
465
Tumor
0.0
361
Tumor
0.0
444
Normal
0.0
427
Tumor
0.0
1013
Tumor
0.0
367
Tumor
0.0
478
Normal
0.0
983
Tumor
0.0
867
Tumor
0.0
926
Normal
0.0
344
Normal
0.0
697
Tumor
0.0
394
Normal
0.0
396
Normal
0.0
391
Tumor
0.0
212
Normal
0.0
331
Tumor
0.0
343
Tumor
0.0
341
Tumor
0.0
824
Normal
0.0
364
Normal
0.0
666
Normal
0.0
534
Normal
0.0
1026
Normal
0.0
451
Tumor
0.0
482
Normal
0.0
211
Tumor
0.0
722
Normal
0.0
981
Tumor
0.0
297
Tumor
0.0
968
Normal
0.0
951
Tumor
0.0
546
Normal
-0.1
1031
Tumor
-0.1
484
Normal
-0.1
284
Normal
-0.1
172
Normal
-0.1
923
Tumor
-0.1
573
Tumor
-0.1
536
Normal
-0.1
384
Normal
-0.1
882
Normal
-0.1
816
Normal
-0.1
328
Normal
-0.1
918
Normal
-0.1
517
Tumor
-0.1
554
Normal
-0.1
954
Normal
-0.1
818
Normal
-0.1
268
Normal
-0.1
162
Normal
-0.1
472
Normal
-0.1
314
Normal
-0.1
545
Tumor
-0.1
524
Normal
-0.1
298
Normal
-0.1
261
Tumor
-0.1
915
Tumor
-0.1
388
Normal
-0.1
386
Normal
-0.1
446
Normal
-0.1
636
Normal
-0.1
741
Tumor
-0.1
311
Tumor
-0.1
125
Tumor
-0.1
964
Normal
-0.1
313
Tumor
-0.1
743
Tumor
-0.1
342
Normal
-0.1
938
Normal
-0.1
574
Normal
-0.1
744
Normal
-0.1
558
Normal
-0.1
113
Tumor
-0.1
884
Normal
-0.1
953
Tumor
-0.1
745
Tumor
-0.1
1014
Normal
-0.1
958
Normal
-0.1
698
Normal
-0.1
428
Normal
-0.1
924
Normal
-0.1
881
Tumor
-0.1
312
Normal
-0.1
135
Tumor
-0.1
686
Normal
-0.1
955
Tumor
-0.1
138
Normal
-0.1
814
Normal
-0.1
421
Tumor
-0.1
352
Normal
-0.1
912
Normal
-0.1
1043
Tumor
-0.1
474
Normal
-0.1
366
Normal
-0.1
778
Normal
-0.1
966
Normal
-0.1
815
Tumor
-0.1
916
Normal
-0.1
196
Normal
-0.1
528
Normal
-0.1
222
Normal
-0.1
851
Tumor
-0.1
218
Normal
-0.1
425
Tumor
-0.1
283
Tumor
-0.1
944
Normal
-0.1
232
Normal
-0.1
716
Normal
-0.1
727
Tumor
-0.1
1022
Normal
-0.1
481
Tumor
-0.1
513
Tumor
-0.1
494
Normal
-0.2
272
Normal
-0.2
921
Tumor
-0.2
563
Tumor
-0.2
978
Normal
-0.2
383
Tumor
-0.2
858
Normal
-0.2
628
Normal
-0.2
865
Tumor
-0.2
368
Normal
-0.2
723
Tumor
-0.2
956
Normal
-0.2
984
Normal
-0.2
353
Tumor
-0.2
1042
Normal
-0.2
1015
Tumor
-0.2
195
Tumor
-0.2
526
Normal
-0.2
572
Normal
-0.2
128
Normal
-0.2
356
Normal
-0.2
746
Normal
-0.2
411
Tumor
-0.2
1028
Normal
-0.2
1016
Normal
-0.2
186
Normal
-0.2
648
Normal
-0.2
278
Normal
-0.2
257
Tumor
-0.2
424
Normal
-0.2
464
Normal
-0.2
664
Normal
-0.2
192
Normal
-0.2
262
Normal
-0.2
671
Tumor
-0.2
452
Normal
-0.2
922
Normal
-0.2
742
Normal
-0.2
786
Normal
-0.2
642
Normal
-0.2
568
Normal
-0.2
148
Normal
-0.2
696
Normal
-0.2
1032
Normal
-0.2
431
Tumor
-0.2
412
Normal
-0.2
518
Normal
-0.2
721
Tumor
-0.2
738
Normal
-0.2
535
Tumor
-0.2
258
Normal
-0.2
852
Normal
-0.2
463
Tumor
-0.2
756
Normal
-0.2
618
Normal
-0.2
523
Tumor
-0.2
447
Tumor
-0.2
448
Normal
-0.2
564
Normal
-0.2
354
Normal
-0.2
714
Normal
-0.2
866
Normal
-0.2
392
Normal
-0.2
416
Normal
-0.2
376
Normal
-0.2
456
Normal
-0.2
514
Normal
-0.2
878
Normal
-0.2
414
Normal
-0.2
527
Tumor
-0.2
124
Normal
-0.2
142
Normal
-0.2
755
Tumor
-0.2
271
Tumor
-0.2
213
Tumor
-0.2
221
Tumor
-0.2
466
Normal
-0.2
1025
Tumor
-0.2
672
Normal
-0.2
662
Normal
-0.2
516
Normal
-0.2
188
Normal
-0.2
187
Tumor
-0.2
647
Tumor
-0.2
467
Tumor
-0.2
136
Normal
-0.2
436
Normal
-0.2
432
Normal
-0.2
492
Normal
-0.2
616
Normal
-0.2
214
Normal
-0.2
393
Tumor
-0.2
728
Normal
-0.3
277
Tumor
-0.3
462
Normal
-0.3
146
Normal
-0.3
1046
Normal
-0.3
1045
Tumor
-0.3
132
Normal
-0.3
874
Normal
-0.3
468
Normal
-0.3
857
Tumor
-0.3
975
Tumor
-0.3
327
Tumor
-0.3
864
Normal
-0.3
422
Normal
-0.3
868
Normal
-0.3
362
Normal
-0.3
713
Tumor
-0.3
615
Tumor
-0.3
114
Normal
-0.3
952
Normal
-0.3
358
Normal
-0.3
914
Normal
-0.3
737
Tumor
-0.3
1021
Tumor
-0.3
967
Tumor
-0.3
461
Tumor
-0.3
126
Normal
-0.3
861
Tumor
-0.3
357
Tumor
-0.3
111
Normal
-0.3
137
Tumor
-0.3
434
Normal
-0.3
455
Tumor
-0.3
817
Tumor
-0.3
863
Tumor
-0.4
387
Tumor
-0.4
661
Tumor
-0.4
426
Normal
-0.4
285
Tumor
-0.4
1027
Tumor
-0.4
363
Tumor
-0.4
785
Tumor
-0.4
862
Normal
-0.4
777
Tumor
-0.4
365
Tumor
-0.4
413
Tumor
-0.4
724
Normal
-0.5
141
Tumor
-0.5
147
Tumor
-0.5
943
Tumor
-0.5
627
Tumor
-0.5
131
Tumor
-0.5
515
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
