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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
573
Tumor
0.8
285
Tumor
0.8
123
Tumor
0.8
671
Tumor
0.7
171
Tumor
0.6
473
Tumor
0.6
877
Tumor
0.5
365
Tumor
0.5
785
Tumor
0.5
261
Tumor
0.5
1013
Tumor
0.5
685
Tumor
0.5
423
Tumor
0.5
147
Tumor
0.5
428
Normal
0.5
967
Tumor
0.5
741
Tumor
0.5
915
Tumor
0.5
815
Tumor
0.5
661
Tumor
0.4
745
Tumor
0.4
463
Tumor
0.4
351
Tumor
0.4
354
Normal
0.4
131
Tumor
0.4
125
Tumor
0.4
465
Tumor
0.4
331
Tumor
0.4
1041
Tumor
0.4
375
Tumor
0.4
127
Tumor
0.4
363
Tumor
0.4
221
Tumor
0.4
358
Normal
0.4
357
Tumor
0.4
663
Tumor
0.4
361
Tumor
0.4
921
Tumor
0.4
231
Tumor
0.4
515
Tumor
0.3
557
Tumor
0.3
1025
Tumor
0.3
432
Normal
0.3
383
Tumor
0.3
777
Tumor
0.3
192
Normal
0.3
353
Tumor
0.3
665
Tumor
0.3
487
Tumor
0.3
384
Normal
0.3
191
Tumor
0.3
267
Tumor
0.3
435
Tumor
0.3
523
Tumor
0.3
277
Tumor
0.3
367
Tumor
0.3
393
Tumor
0.3
616
Normal
0.3
425
Tumor
0.3
426
Normal
0.3
517
Tumor
0.3
957
Tumor
0.3
112
Tumor
0.3
217
Tumor
0.3
666
Normal
0.3
227
Tumor
0.3
513
Tumor
0.3
352
Normal
0.3
424
Normal
0.3
436
Normal
0.2
414
Normal
0.2
427
Tumor
0.2
222
Normal
0.2
342
Normal
0.2
672
Normal
0.2
431
Tumor
0.2
977
Tumor
0.2
527
Tumor
0.2
545
Tumor
0.2
126
Normal
0.2
867
Tumor
0.2
713
Tumor
0.2
851
Tumor
0.2
743
Tumor
0.2
627
Tumor
0.2
641
Tumor
0.2
981
Tumor
0.2
394
Normal
0.2
124
Normal
0.2
917
Tumor
0.2
615
Tumor
0.2
446
Normal
0.2
145
Tumor
0.2
444
Normal
0.2
983
Tumor
0.2
491
Tumor
0.2
858
Normal
0.2
128
Normal
0.2
114
Normal
0.2
635
Tumor
0.2
422
Normal
0.2
884
Normal
0.2
443
Tumor
0.2
464
Normal
0.2
571
Tumor
0.2
913
Tumor
0.2
456
Normal
0.2
137
Tumor
0.2
912
Normal
0.2
313
Tumor
0.2
141
Tumor
0.2
618
Normal
0.2
553
Tumor
0.2
468
Normal
0.2
185
Tumor
0.2
368
Normal
0.2
111
Normal
0.2
642
Normal
0.1
1032
Normal
0.1
881
Tumor
0.1
433
Tumor
0.1
636
Normal
0.1
452
Normal
0.1
564
Normal
0.1
223
Tumor
0.1
388
Normal
0.1
343
Tumor
0.1
466
Normal
0.1
187
Tumor
0.1
563
Tumor
0.1
224
Normal
0.1
824
Normal
0.1
132
Normal
0.1
882
Normal
0.1
572
Normal
0.1
186
Normal
0.1
526
Normal
0.1
461
Tumor
0.1
195
Tumor
0.1
558
Normal
0.1
953
Tumor
0.1
823
Tumor
0.1
863
Tumor
0.1
715
Tumor
0.1
868
Normal
0.1
162
Normal
0.1
686
Normal
0.1
355
Tumor
0.1
1042
Normal
0.1
218
Normal
0.1
1043
Tumor
0.1
451
Tumor
0.1
664
Normal
0.1
965
Tumor
0.1
392
Normal
0.1
271
Tumor
0.1
482
Normal
0.1
328
Normal
0.1
395
Tumor
0.1
695
Tumor
0.1
268
Normal
0.1
362
Normal
0.1
411
Tumor
0.1
455
Tumor
0.1
385
Tumor
0.1
861
Tumor
0.1
146
Normal
0.1
138
Normal
0.1
944
Normal
0.1
172
Normal
0.1
756
Normal
0.1
142
Normal
0.1
818
Normal
0.1
421
Tumor
0.1
1044
Normal
0.1
413
Tumor
0.1
214
Normal
0.1
391
Tumor
0.1
366
Normal
0.1
714
Normal
0.1
434
Normal
0.1
471
Tumor
0.1
136
Normal
0.1
938
Normal
0.1
874
Normal
0.0
866
Normal
0.0
497
Tumor
0.0
161
Tumor
0.0
864
Normal
0.0
722
Normal
0.0
257
Tumor
0.0
533
Tumor
0.0
396
Normal
0.0
283
Tumor
0.0
574
Normal
0.0
883
Tumor
0.0
298
Normal
0.0
1031
Tumor
0.0
696
Normal
0.0
721
Tumor
0.0
786
Normal
0.0
356
Normal
0.0
878
Normal
0.0
628
Normal
0.0
314
Normal
0.0
212
Normal
0.0
412
Normal
0.0
924
Normal
0.0
567
Tumor
0.0
1046
Normal
0.0
956
Normal
0.0
648
Normal
0.0
448
Normal
0.0
196
Normal
0.0
865
Tumor
0.0
923
Tumor
0.0
716
Normal
0.0
697
Tumor
0.0
964
Normal
0.0
516
Normal
0.0
968
Normal
0.0
728
Normal
0.0
976
Normal
0.0
467
Tumor
0.0
344
Normal
0.0
135
Tumor
0.0
286
Normal
0.0
982
Normal
0.0
926
Normal
0.0
518
Normal
0.0
262
Normal
0.0
1016
Normal
0.0
916
Normal
0.0
228
Normal
0.0
1021
Tumor
0.0
914
Normal
0.0
232
Normal
0.0
213
Tumor
0.0
311
Tumor
0.0
376
Normal
0.0
647
Tumor
0.0
312
Normal
0.0
258
Normal
0.0
445
Tumor
0.0
278
Normal
0.0
341
Tumor
0.0
738
Normal
0.0
188
Normal
0.0
662
Normal
0.0
958
Normal
0.0
1015
Tumor
0.0
723
Tumor
0.0
148
Normal
0.0
724
Normal
0.0
918
Normal
0.0
568
Normal
0.0
481
Tumor
0.0
746
Normal
-0.1
816
Normal
-0.1
447
Tumor
-0.1
364
Normal
-0.1
284
Normal
-0.1
922
Normal
-0.1
483
Tumor
-0.1
272
Normal
-0.1
514
Normal
-0.1
297
Tumor
-0.1
525
Tumor
-0.1
852
Normal
-0.1
462
Normal
-0.1
211
Tumor
-0.1
617
Tumor
-0.1
488
Normal
-0.1
1026
Normal
-0.1
415
Tumor
-0.1
698
Normal
-0.1
113
Tumor
-0.1
943
Tumor
-0.1
813
Tumor
-0.1
534
Normal
-0.1
873
Tumor
-0.1
524
Normal
-0.1
492
Normal
-0.1
546
Normal
-0.1
332
Normal
-0.1
911
Tumor
-0.1
484
Normal
-0.1
1022
Normal
-0.1
474
Normal
-0.1
737
Tumor
-0.1
538
Normal
-0.1
742
Normal
-0.1
416
Normal
-0.1
554
Normal
-0.1
1045
Tumor
-0.1
386
Normal
-0.1
387
Tumor
-0.1
727
Tumor
-0.1
975
Tumor
-0.1
862
Normal
-0.1
472
Normal
-0.1
498
Normal
-0.1
857
Tumor
-0.1
925
Tumor
-0.1
966
Normal
-0.1
755
Tumor
-0.1
528
Normal
-0.1
1028
Normal
-0.1
814
Normal
-0.1
955
Tumor
-0.2
478
Normal
-0.2
778
Normal
-0.2
817
Tumor
-0.2
327
Tumor
-0.2
1014
Normal
-0.2
494
Normal
-0.2
493
Tumor
-0.2
744
Normal
-0.2
952
Normal
-0.2
536
Normal
-0.2
963
Tumor
-0.2
978
Normal
-0.2
937
Tumor
-0.2
477
Tumor
-0.2
1027
Tumor
-0.2
984
Normal
-0.2
537
Tumor
-0.2
535
Tumor
-0.3
954
Normal
-0.3
951
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
