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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRK2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
63.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
62.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
61.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
49.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
48.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
46.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
40.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
38.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
36.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
34.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
31.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.7
883
Tumor
1.0
873
Tumor
1.0
983
Tumor
0.9
211
Tumor
0.9
661
Tumor
0.8
434
Normal
0.8
135
Tumor
0.7
536
Normal
0.7
112
Tumor
0.6
815
Tumor
0.6
814
Normal
0.5
444
Normal
0.5
311
Tumor
0.5
966
Normal
0.5
917
Tumor
0.5
455
Tumor
0.5
213
Tumor
0.4
188
Normal
0.4
535
Tumor
0.4
384
Normal
0.4
283
Tumor
0.4
285
Tumor
0.4
943
Tumor
0.4
524
Normal
0.3
721
Tumor
0.3
262
Normal
0.3
737
Tumor
0.3
447
Tumor
0.3
224
Normal
0.3
272
Normal
0.3
628
Normal
0.3
362
Normal
0.3
297
Tumor
0.3
492
Normal
0.3
662
Normal
0.3
368
Normal
0.3
724
Normal
0.3
851
Tumor
0.3
185
Tumor
0.3
671
Tumor
0.3
686
Normal
0.3
672
Normal
0.3
975
Tumor
0.3
386
Normal
0.3
914
Normal
0.3
312
Normal
0.3
432
Normal
0.3
471
Tumor
0.3
268
Normal
0.3
366
Normal
0.2
446
Normal
0.2
443
Tumor
0.2
421
Tumor
0.2
978
Normal
0.2
396
Normal
0.2
498
Normal
0.2
852
Normal
0.2
365
Tumor
0.2
343
Tumor
0.2
1015
Tumor
0.2
818
Normal
0.2
428
Normal
0.2
816
Normal
0.2
478
Normal
0.2
1021
Tumor
0.2
881
Tumor
0.2
956
Normal
0.2
192
Normal
0.2
963
Tumor
0.2
664
Normal
0.2
968
Normal
0.2
467
Tumor
0.2
385
Tumor
0.2
142
Normal
0.2
1031
Tumor
0.2
538
Normal
0.2
125
Tumor
0.2
415
Tumor
0.2
391
Tumor
0.2
388
Normal
0.2
858
Normal
0.2
424
Normal
0.2
813
Tumor
0.2
284
Normal
0.2
666
Normal
0.1
161
Tumor
0.1
383
Tumor
0.1
823
Tumor
0.1
527
Tumor
0.1
722
Normal
0.1
824
Normal
0.1
212
Normal
0.1
126
Normal
0.1
861
Tumor
0.1
394
Normal
0.1
1043
Tumor
0.1
114
Normal
0.1
124
Normal
0.1
916
Normal
0.1
364
Normal
0.1
958
Normal
0.1
954
Normal
0.1
375
Tumor
0.1
526
Normal
0.1
138
Normal
0.1
778
Normal
0.1
563
Tumor
0.1
491
Tumor
0.1
195
Tumor
0.1
141
Tumor
0.1
356
Normal
0.1
716
Normal
0.1
223
Tumor
0.1
648
Normal
0.1
857
Tumor
0.1
1028
Normal
0.1
461
Tumor
0.1
456
Normal
0.1
217
Tumor
0.1
146
Normal
0.1
665
Tumor
0.1
952
Normal
0.1
433
Tumor
0.1
696
Normal
0.1
728
Normal
0.1
136
Normal
0.1
414
Normal
0.1
923
Tumor
0.1
387
Tumor
0.1
874
Normal
0.1
1044
Normal
0.1
976
Normal
0.1
738
Normal
0.1
361
Tumor
0.1
162
Normal
0.1
271
Tumor
0.1
714
Normal
0.1
554
Normal
0.1
261
Tumor
0.1
258
Normal
0.1
416
Normal
0.1
564
Normal
0.1
697
Tumor
0.1
426
Normal
0.1
278
Normal
0.1
331
Tumor
0.1
277
Tumor
0.1
913
Tumor
0.1
474
Normal
0.1
468
Normal
0.1
286
Normal
0.0
367
Tumor
0.0
866
Normal
0.0
395
Tumor
0.0
1016
Normal
0.0
422
Normal
0.0
977
Tumor
0.0
392
Normal
0.0
187
Tumor
0.0
616
Normal
0.0
327
Tumor
0.0
1042
Normal
0.0
328
Normal
0.0
572
Normal
0.0
344
Normal
0.0
481
Tumor
0.0
984
Normal
0.0
1026
Normal
0.0
1025
Tumor
0.0
715
Tumor
0.0
911
Tumor
0.0
494
Normal
0.0
314
Normal
0.0
412
Normal
0.0
137
Tumor
0.0
148
Normal
0.0
951
Tumor
0.0
574
Normal
0.0
955
Tumor
0.0
218
Normal
0.0
647
Tumor
0.0
636
Normal
0.0
516
Normal
0.0
518
Normal
0.0
472
Normal
0.0
786
Normal
0.0
352
Normal
0.0
354
Normal
0.0
425
Tumor
0.0
488
Normal
0.0
926
Normal
0.0
127
Tumor
0.0
462
Normal
0.0
111
Normal
0.0
427
Tumor
0.0
558
Normal
0.0
514
Normal
0.0
864
Normal
0.0
938
Normal
0.0
967
Tumor
0.0
817
Tumor
0.0
483
Tumor
0.0
741
Tumor
0.0
231
Tumor
0.0
865
Tumor
0.0
862
Normal
0.0
172
Normal
0.0
742
Normal
0.0
882
Normal
0.0
393
Tumor
0.0
918
Normal
0.0
744
Normal
0.0
214
Normal
0.0
878
Normal
0.0
713
Tumor
0.0
186
Normal
0.0
924
Normal
0.0
528
Normal
0.0
957
Tumor
0.0
232
Normal
0.0
452
Normal
0.0
376
Normal
0.0
413
Tumor
0.0
463
Tumor
0.0
431
Tumor
0.0
573
Tumor
0.0
147
Tumor
0.0
642
Normal
0.0
451
Tumor
0.0
867
Tumor
0.0
1046
Normal
0.0
981
Tumor
0.0
785
Tumor
0.0
618
Normal
-0.1
228
Normal
-0.1
546
Normal
-0.1
257
Tumor
-0.1
464
Normal
-0.1
436
Normal
-0.1
332
Normal
-0.1
493
Tumor
-0.1
145
Tumor
-0.1
1027
Tumor
-0.1
342
Normal
-0.1
877
Tumor
-0.1
635
Tumor
-0.1
1014
Normal
-0.1
1022
Normal
-0.1
617
Tumor
-0.1
756
Normal
-0.1
746
Normal
-0.1
487
Tumor
-0.1
484
Normal
-0.1
723
Tumor
-0.1
196
Normal
-0.1
445
Tumor
-0.1
191
Tumor
-0.1
513
Tumor
-0.1
113
Tumor
-0.1
534
Normal
-0.1
944
Normal
-0.1
755
Tumor
-0.1
698
Normal
-0.1
964
Normal
-0.1
466
Normal
-0.1
641
Tumor
-0.1
568
Normal
-0.1
298
Normal
-0.1
267
Tumor
-0.1
922
Normal
-0.1
357
Tumor
-0.1
525
Tumor
-0.1
868
Normal
-0.1
482
Normal
-0.1
222
Normal
-0.1
423
Tumor
-0.1
884
Normal
-0.1
557
Tumor
-0.1
128
Normal
-0.2
448
Normal
-0.2
863
Tumor
-0.2
132
Normal
-0.2
355
Tumor
-0.2
982
Normal
-0.2
131
Tumor
-0.2
515
Tumor
-0.2
351
Tumor
-0.2
925
Tumor
-0.2
745
Tumor
-0.2
358
Normal
-0.2
912
Normal
-0.2
915
Tumor
-0.2
171
Tumor
-0.2
685
Tumor
-0.2
545
Tumor
-0.2
921
Tumor
-0.2
1045
Tumor
-0.2
497
Tumor
-0.2
1041
Tumor
-0.2
221
Tumor
-0.2
523
Tumor
-0.2
363
Tumor
-0.2
1032
Normal
-0.2
341
Tumor
-0.2
353
Tumor
-0.2
313
Tumor
-0.2
937
Tumor
-0.2
777
Tumor
-0.2
517
Tumor
-0.3
953
Tumor
-0.3
627
Tumor
-0.3
553
Tumor
-0.3
727
Tumor
-0.3
663
Tumor
-0.3
567
Tumor
-0.3
615
Tumor
-0.3
465
Tumor
-0.3
411
Tumor
-0.4
435
Tumor
-0.4
533
Tumor
-0.4
571
Tumor
-0.5
123
Tumor
-0.5
537
Tumor
-0.5
477
Tumor
-0.5
743
Tumor
-0.6
227
Tumor
-0.6
965
Tumor
-0.6
1013
Tumor
-0.7
695
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
