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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNASEH2C is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNASEH2C is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.9
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
58.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
45.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
42.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
35.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
33.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
32.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1043
Tumor
1.7
211
Tumor
1.4
1045
Tumor
1.4
411
Tumor
1.3
491
Tumor
1.2
983
Tumor
1.1
385
Tumor
1.0
724
Normal
1.0
1013
Tumor
1.0
351
Tumor
1.0
815
Tumor
0.9
877
Tumor
0.9
131
Tumor
0.9
227
Tumor
0.9
743
Tumor
0.9
192
Normal
0.9
375
Tumor
0.8
661
Tumor
0.8
357
Tumor
0.8
473
Tumor
0.7
413
Tumor
0.7
213
Tumor
0.7
697
Tumor
0.7
271
Tumor
0.7
943
Tumor
0.7
217
Tumor
0.7
641
Tumor
0.7
261
Tumor
0.7
444
Normal
0.6
1015
Tumor
0.6
431
Tumor
0.6
814
Normal
0.6
977
Tumor
0.6
367
Tumor
0.6
698
Normal
0.6
383
Tumor
0.5
553
Tumor
0.5
1031
Tumor
0.5
463
Tumor
0.5
881
Tumor
0.5
517
Tumor
0.5
455
Tumor
0.5
917
Tumor
0.5
467
Tumor
0.5
497
Tumor
0.5
384
Normal
0.5
535
Tumor
0.5
965
Tumor
0.5
434
Normal
0.5
967
Tumor
0.4
1025
Tumor
0.4
984
Normal
0.4
447
Tumor
0.4
863
Tumor
0.4
313
Tumor
0.4
978
Normal
0.4
817
Tumor
0.4
663
Tumor
0.4
861
Tumor
0.4
224
Normal
0.3
387
Tumor
0.3
865
Tumor
0.3
923
Tumor
0.3
355
Tumor
0.3
283
Tumor
0.3
1046
Normal
0.3
277
Tumor
0.3
536
Normal
0.3
195
Tumor
0.3
951
Tumor
0.3
1044
Normal
0.3
331
Tumor
0.3
914
Normal
0.3
1021
Tumor
0.3
332
Normal
0.2
391
Tumor
0.2
268
Normal
0.2
665
Tumor
0.2
563
Tumor
0.2
963
Tumor
0.2
362
Normal
0.2
523
Tumor
0.2
483
Tumor
0.2
311
Tumor
0.2
223
Tumor
0.2
386
Normal
0.2
981
Tumor
0.2
471
Tumor
0.2
823
Tumor
0.2
478
Normal
0.2
537
Tumor
0.2
966
Normal
0.1
272
Normal
0.1
737
Tumor
0.1
366
Normal
0.1
498
Normal
0.1
448
Normal
0.1
567
Tumor
0.1
312
Normal
0.1
957
Tumor
0.1
647
Tumor
0.1
524
Normal
0.1
813
Tumor
0.1
314
Normal
0.1
492
Normal
0.1
363
Tumor
0.1
1016
Normal
0.1
297
Tumor
0.1
975
Tumor
0.1
921
Tumor
0.1
262
Normal
0.1
368
Normal
0.1
671
Tumor
0.1
191
Tumor
0.1
285
Tumor
0.1
744
Normal
0.0
214
Normal
0.0
976
Normal
0.0
421
Tumor
0.0
146
Normal
0.0
298
Normal
0.0
715
Tumor
0.0
427
Tumor
0.0
278
Normal
0.0
574
Normal
0.0
525
Tumor
0.0
573
Tumor
0.0
137
Tumor
0.0
1032
Normal
0.0
365
Tumor
0.0
982
Normal
0.0
222
Normal
0.0
493
Tumor
0.0
284
Normal
0.0
341
Tumor
0.0
1022
Normal
0.0
221
Tumor
0.0
516
Normal
0.0
1014
Normal
0.0
218
Normal
0.0
557
Tumor
0.0
913
Tumor
0.0
554
Normal
0.0
142
Normal
-0.1
435
Tumor
-0.1
396
Normal
-0.1
558
Normal
-0.1
713
Tumor
-0.1
388
Normal
-0.1
376
Normal
-0.1
494
Normal
-0.1
343
Tumor
-0.1
546
Normal
-0.1
883
Tumor
-0.1
672
Normal
-0.1
533
Tumor
-0.1
545
Tumor
-0.1
873
Tumor
-0.1
617
Tumor
-0.1
228
Normal
-0.1
352
Normal
-0.1
818
Normal
-0.1
882
Normal
-0.1
912
Normal
-0.1
721
Tumor
-0.1
196
Normal
-0.1
433
Tumor
-0.1
857
Tumor
-0.1
443
Tumor
-0.1
852
Normal
-0.1
461
Tumor
-0.1
212
Normal
-0.1
662
Normal
-0.1
1028
Normal
-0.1
518
Normal
-0.2
451
Tumor
-0.2
446
Normal
-0.2
916
Normal
-0.2
571
Tumor
-0.2
138
Normal
-0.2
1042
Normal
-0.2
728
Normal
-0.2
884
Normal
-0.2
572
Normal
-0.2
628
Normal
-0.2
361
Tumor
-0.2
722
Normal
-0.2
742
Normal
-0.2
141
Tumor
-0.2
456
Normal
-0.2
538
Normal
-0.2
487
Tumor
-0.2
354
Normal
-0.2
514
Normal
-0.2
958
Normal
-0.2
741
Tumor
-0.2
415
Tumor
-0.2
392
Normal
-0.2
816
Normal
-0.2
527
Tumor
-0.2
466
Normal
-0.2
353
Tumor
-0.2
685
Tumor
-0.2
135
Tumor
-0.3
286
Normal
-0.3
755
Tumor
-0.3
468
Normal
-0.3
416
Normal
-0.3
738
Normal
-0.3
464
Normal
-0.3
395
Tumor
-0.3
394
Normal
-0.3
878
Normal
-0.3
648
Normal
-0.3
358
Normal
-0.3
851
Tumor
-0.3
918
Normal
-0.3
968
Normal
-0.3
858
Normal
-0.3
1027
Tumor
-0.3
953
Tumor
-0.3
824
Normal
-0.3
686
Normal
-0.3
488
Normal
-0.3
664
Normal
-0.3
568
Normal
-0.3
714
Normal
-0.3
257
Tumor
-0.3
364
Normal
-0.3
445
Tumor
-0.3
786
Normal
-0.3
954
Normal
-0.4
778
Normal
-0.4
756
Normal
-0.4
911
Tumor
-0.4
136
Normal
-0.4
344
Normal
-0.4
534
Normal
-0.4
867
Tumor
-0.4
1026
Normal
-0.4
356
Normal
-0.4
564
Normal
-0.4
145
Tumor
-0.4
716
Normal
-0.4
925
Tumor
-0.4
412
Normal
-0.4
515
Tumor
-0.4
727
Tumor
-0.4
232
Normal
-0.4
964
Normal
-0.4
868
Normal
-0.4
666
Normal
-0.4
482
Normal
-0.4
926
Normal
-0.4
258
Normal
-0.4
627
Tumor
-0.5
484
Normal
-0.5
952
Normal
-0.5
528
Normal
-0.5
452
Normal
-0.5
526
Normal
-0.5
432
Normal
-0.5
424
Normal
-0.5
636
Normal
-0.5
328
Normal
-0.5
642
Normal
-0.5
1041
Tumor
-0.5
696
Normal
-0.5
132
Normal
-0.5
955
Tumor
-0.5
723
Tumor
-0.5
944
Normal
-0.5
393
Tumor
-0.5
777
Tumor
-0.5
231
Tumor
-0.5
866
Normal
-0.5
785
Tumor
-0.5
327
Tumor
-0.5
956
Normal
-0.5
864
Normal
-0.5
513
Tumor
-0.6
481
Tumor
-0.6
472
Normal
-0.6
462
Normal
-0.6
938
Normal
-0.6
474
Normal
-0.6
922
Normal
-0.6
924
Normal
-0.6
695
Tumor
-0.6
615
Tumor
-0.6
422
Normal
-0.6
915
Tumor
-0.6
342
Normal
-0.7
423
Tumor
-0.7
465
Tumor
-0.7
746
Normal
-0.7
874
Normal
-0.7
937
Tumor
-0.7
267
Tumor
-0.7
618
Normal
-0.7
436
Normal
-0.7
428
Normal
-0.8
862
Normal
-0.8
426
Normal
-0.9
616
Normal
-0.9
414
Normal
-0.9
425
Tumor
-0.9
635
Tumor
-0.9
477
Tumor
-1.0
745
Tumor
-1.6
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
