We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SP3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
53.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
231
Samples
Sample
Description
TPM
DO48682
0 years, female, NA, stage:3, dead, 120 days
41.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.0
523
Tumor
1.0
497
Tumor
0.9
1031
Tumor
0.9
965
Tumor
0.8
977
Tumor
0.8
737
Tumor
0.8
951
Tumor
0.8
267
Tumor
0.8
131
Tumor
0.8
487
Tumor
0.7
357
Tumor
0.7
473
Tumor
0.7
975
Tumor
0.6
471
Tumor
0.6
984
Normal
0.6
211
Tumor
0.6
271
Tumor
0.6
957
Tumor
0.6
695
Tumor
0.6
313
Tumor
0.6
553
Tumor
0.5
425
Tumor
0.5
1014
Normal
0.5
445
Tumor
0.5
727
Tumor
0.5
983
Tumor
0.5
537
Tumor
0.5
545
Tumor
0.4
817
Tumor
0.4
463
Tumor
0.4
755
Tumor
0.4
921
Tumor
0.4
698
Normal
0.4
1021
Tumor
0.4
874
Normal
0.4
355
Tumor
0.4
1013
Tumor
0.4
517
Tumor
0.4
1025
Tumor
0.4
978
Normal
0.3
527
Tumor
0.3
823
Tumor
0.3
1022
Normal
0.3
554
Normal
0.3
815
Tumor
0.3
141
Tumor
0.3
963
Tumor
0.3
171
Tumor
0.3
385
Tumor
0.3
1041
Tumor
0.3
224
Normal
0.3
865
Tumor
0.3
493
Tumor
0.3
926
Normal
0.3
715
Tumor
0.3
411
Tumor
0.3
982
Normal
0.3
415
Tumor
0.3
814
Normal
0.3
1042
Normal
0.3
1032
Normal
0.3
123
Tumor
0.3
538
Normal
0.2
376
Normal
0.2
533
Tumor
0.2
744
Normal
0.2
862
Normal
0.2
361
Tumor
0.2
1016
Normal
0.2
477
Tumor
0.2
635
Tumor
0.2
881
Tumor
0.2
525
Tumor
0.2
331
Tumor
0.2
685
Tumor
0.2
343
Tumor
0.2
285
Tumor
0.2
393
Tumor
0.2
286
Normal
0.2
524
Normal
0.2
777
Tumor
0.2
367
Tumor
0.2
284
Normal
0.2
628
Normal
0.2
636
Normal
0.2
976
Normal
0.2
882
Normal
0.2
813
Tumor
0.2
883
Tumor
0.2
1043
Tumor
0.2
366
Normal
0.2
161
Tumor
0.2
212
Normal
0.1
877
Tumor
0.1
492
Normal
0.1
363
Tumor
0.1
917
Tumor
0.1
396
Normal
0.1
952
Normal
0.1
384
Normal
0.1
362
Normal
0.1
124
Normal
0.1
878
Normal
0.1
778
Normal
0.1
498
Normal
0.1
958
Normal
0.1
461
Tumor
0.1
546
Normal
0.1
664
Normal
0.1
365
Tumor
0.1
861
Tumor
0.1
483
Tumor
0.1
277
Tumor
0.1
114
Normal
0.1
741
Tumor
0.1
185
Tumor
0.1
923
Tumor
0.1
742
Normal
0.1
956
Normal
0.1
534
Normal
0.1
478
Normal
0.1
112
Tumor
0.1
462
Normal
0.1
696
Normal
0.1
484
Normal
0.1
858
Normal
0.1
515
Tumor
0.1
724
Normal
0.1
386
Normal
0.1
383
Tumor
0.0
618
Normal
0.0
455
Tumor
0.0
451
Tumor
0.0
615
Tumor
0.0
472
Normal
0.0
298
Normal
0.0
824
Normal
0.0
857
Tumor
0.0
818
Normal
0.0
968
Normal
0.0
1015
Tumor
0.0
431
Tumor
0.0
661
Tumor
0.0
435
Tumor
0.0
388
Normal
0.0
617
Tumor
0.0
375
Tumor
0.0
866
Normal
0.0
884
Normal
0.0
686
Normal
0.0
474
Normal
0.0
135
Tumor
0.0
387
Tumor
0.0
723
Tumor
0.0
488
Normal
0.0
572
Normal
0.0
491
Tumor
0.0
392
Normal
0.0
297
Tumor
0.0
518
Normal
0.0
283
Tumor
0.0
312
Normal
0.0
738
Normal
0.0
937
Tumor
0.0
746
Normal
0.0
351
Tumor
0.0
368
Normal
0.0
1026
Normal
0.0
925
Tumor
0.0
756
Normal
0.0
456
Normal
0.0
391
Tumor
0.0
864
Normal
0.0
443
Tumor
0.0
967
Tumor
0.0
113
Tumor
0.0
944
Normal
0.0
966
Normal
0.0
716
Normal
-0.1
1046
Normal
-0.1
672
Normal
-0.1
964
Normal
-0.1
943
Tumor
-0.1
147
Tumor
-0.1
261
Tumor
-0.1
481
Tumor
-0.1
482
Normal
-0.1
873
Tumor
-0.1
222
Normal
-0.1
916
Normal
-0.1
852
Normal
-0.1
364
Normal
-0.1
914
Normal
-0.1
954
Normal
-0.1
228
Normal
-0.1
464
Normal
-0.1
444
Normal
-0.1
535
Tumor
-0.1
642
Normal
-0.1
785
Tumor
-0.1
867
Tumor
-0.1
526
Normal
-0.1
816
Normal
-0.1
918
Normal
-0.1
786
Normal
-0.1
132
Normal
-0.1
528
Normal
-0.1
616
Normal
-0.1
714
Normal
-0.1
915
Tumor
-0.1
516
Normal
-0.1
494
Normal
-0.1
911
Tumor
-0.1
641
Tumor
-0.1
423
Tumor
-0.1
227
Tumor
-0.1
162
Normal
-0.1
447
Tumor
-0.1
955
Tumor
-0.1
218
Normal
-0.1
394
Normal
-0.1
627
Tumor
-0.1
332
Normal
-0.1
427
Tumor
-0.1
1044
Normal
-0.1
111
Normal
-0.2
278
Normal
-0.2
448
Normal
-0.2
1028
Normal
-0.2
938
Normal
-0.2
465
Tumor
-0.2
136
Normal
-0.2
352
Normal
-0.2
981
Tumor
-0.2
666
Normal
-0.2
912
Normal
-0.2
728
Normal
-0.2
574
Normal
-0.2
924
Normal
-0.2
851
Tumor
-0.2
196
Normal
-0.2
557
Tumor
-0.2
446
Normal
-0.2
314
Normal
-0.2
567
Tumor
-0.2
358
Normal
-0.2
722
Normal
-0.2
558
Normal
-0.2
223
Tumor
-0.2
126
Normal
-0.2
568
Normal
-0.2
137
Tumor
-0.2
356
Normal
-0.2
341
Tumor
-0.2
354
Normal
-0.2
146
Normal
-0.2
342
Normal
-0.2
138
Normal
-0.2
953
Tumor
-0.2
922
Normal
-0.2
128
Normal
-0.2
663
Tumor
-0.2
412
Normal
-0.3
214
Normal
-0.3
395
Tumor
-0.3
571
Tumor
-0.3
466
Normal
-0.3
125
Tumor
-0.3
217
Tumor
-0.3
195
Tumor
-0.3
434
Normal
-0.3
426
Normal
-0.3
187
Tumor
-0.3
344
Normal
-0.3
414
Normal
-0.3
563
Tumor
-0.3
428
Normal
-0.3
662
Normal
-0.3
232
Normal
-0.3
422
Normal
-0.3
436
Normal
-0.3
536
Normal
-0.3
721
Tumor
-0.3
186
Normal
-0.3
433
Tumor
-0.3
913
Tumor
-0.3
192
Normal
-0.3
648
Normal
-0.3
424
Normal
-0.3
564
Normal
-0.3
467
Tumor
-0.3
745
Tumor
-0.4
416
Normal
-0.4
514
Normal
-0.4
697
Tumor
-0.4
1027
Tumor
-0.4
268
Normal
-0.4
353
Tumor
-0.4
328
Normal
-0.4
432
Normal
-0.4
191
Tumor
-0.4
868
Normal
-0.4
127
Tumor
-0.4
573
Tumor
-0.4
148
Normal
-0.4
1045
Tumor
-0.5
142
Normal
-0.5
327
Tumor
-0.5
713
Tumor
-0.5
311
Tumor
-0.5
221
Tumor
-0.5
231
Tumor
-0.5
188
Normal
-0.5
468
Normal
-0.5
172
Normal
-0.5
665
Tumor
-0.5
671
Tumor
-0.5
213
Tumor
-0.5
413
Tumor
-0.6
452
Normal
-0.6
513
Tumor
-0.6
647
Tumor
-0.6
145
Tumor
-0.6
258
Normal
-0.6
272
Normal
-0.6
863
Tumor
-0.7
257
Tumor
-0.7
262
Normal
-0.7
421
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
