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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB37 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB37 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
573
Tumor
0.6
745
Tumor
0.6
567
Tumor
0.5
125
Tumor
0.5
937
Tumor
0.5
713
Tumor
0.5
527
Tumor
0.5
538
Normal
0.4
917
Tumor
0.4
343
Tumor
0.4
851
Tumor
0.4
227
Tumor
0.4
877
Tumor
0.4
1025
Tumor
0.4
813
Tumor
0.4
471
Tumor
0.4
1042
Normal
0.4
1027
Tumor
0.4
413
Tumor
0.4
524
Normal
0.4
523
Tumor
0.3
921
Tumor
0.3
491
Tumor
0.3
367
Tumor
0.3
967
Tumor
0.3
463
Tumor
0.3
411
Tumor
0.3
536
Normal
0.3
1026
Normal
0.3
351
Tumor
0.3
617
Tumor
0.3
1044
Normal
0.3
487
Tumor
0.3
823
Tumor
0.3
815
Tumor
0.3
385
Tumor
0.3
1032
Normal
0.3
557
Tumor
0.3
857
Tumor
0.3
938
Normal
0.3
368
Normal
0.3
671
Tumor
0.3
492
Normal
0.3
498
Normal
0.3
686
Normal
0.3
817
Tumor
0.3
697
Tumor
0.3
627
Tumor
0.3
384
Normal
0.2
434
Normal
0.2
923
Tumor
0.2
1014
Normal
0.2
916
Normal
0.2
778
Normal
0.2
964
Normal
0.2
376
Normal
0.2
755
Tumor
0.2
616
Normal
0.2
983
Tumor
0.2
257
Tumor
0.2
558
Normal
0.2
537
Tumor
0.2
976
Normal
0.2
393
Tumor
0.2
868
Normal
0.2
328
Normal
0.2
447
Tumor
0.2
146
Normal
0.2
142
Normal
0.2
545
Tumor
0.2
572
Normal
0.2
1028
Normal
0.2
615
Tumor
0.2
914
Normal
0.2
716
Normal
0.2
884
Normal
0.2
958
Normal
0.2
957
Tumor
0.2
966
Normal
0.2
968
Normal
0.2
963
Tumor
0.2
357
Tumor
0.2
721
Tumor
0.2
1046
Normal
0.2
188
Normal
0.2
881
Tumor
0.2
362
Normal
0.2
926
Normal
0.2
488
Normal
0.2
494
Normal
0.2
172
Normal
0.2
742
Normal
0.2
528
Normal
0.2
553
Tumor
0.2
1022
Normal
0.2
723
Tumor
0.2
195
Tumor
0.2
863
Tumor
0.2
1043
Tumor
0.2
672
Normal
0.2
526
Normal
0.2
435
Tumor
0.1
635
Tumor
0.1
984
Normal
0.1
618
Normal
0.1
641
Tumor
0.1
356
Normal
0.1
464
Normal
0.1
478
Normal
0.1
978
Normal
0.1
722
Normal
0.1
666
Normal
0.1
124
Normal
0.1
1021
Tumor
0.1
366
Normal
0.1
341
Tumor
0.1
685
Tumor
0.1
852
Normal
0.1
924
Normal
0.1
223
Tumor
0.1
816
Normal
0.1
283
Tumor
0.1
546
Normal
0.1
352
Normal
0.1
1016
Normal
0.1
432
Normal
0.1
525
Tumor
0.1
882
Normal
0.1
824
Normal
0.1
818
Normal
0.1
412
Normal
0.1
861
Tumor
0.1
444
Normal
0.1
975
Tumor
0.1
1015
Tumor
0.1
873
Tumor
0.1
727
Tumor
0.1
648
Normal
0.1
922
Normal
0.1
867
Tumor
0.1
424
Normal
0.1
358
Normal
0.1
814
Normal
0.1
981
Tumor
0.1
698
Normal
0.1
554
Normal
0.1
862
Normal
0.1
162
Normal
0.1
696
Normal
0.1
342
Normal
0.1
864
Normal
0.1
568
Normal
0.1
786
Normal
0.1
484
Normal
0.1
186
Normal
0.1
636
Normal
0.1
535
Tumor
0.1
364
Normal
0.1
534
Normal
0.1
353
Tumor
0.1
446
Normal
0.1
954
Normal
0.1
313
Tumor
0.1
448
Normal
0.1
363
Tumor
0.1
361
Tumor
0.1
332
Normal
0.1
331
Tumor
0.1
514
Normal
0.1
416
Normal
0.1
394
Normal
0.1
517
Tumor
0.1
563
Tumor
0.1
874
Normal
0.1
878
Normal
0.1
756
Normal
0.1
571
Tumor
0.1
344
Normal
0.1
858
Normal
0.1
436
Normal
0.1
466
Normal
0.1
662
Normal
0.1
724
Normal
0.1
1041
Tumor
0.1
311
Tumor
0.1
286
Normal
0.1
944
Normal
0.1
213
Tumor
0.1
472
Normal
0.1
982
Normal
0.1
518
Normal
0.1
665
Tumor
0.0
218
Normal
0.0
493
Tumor
0.0
138
Normal
0.0
191
Tumor
0.0
516
Normal
0.0
391
Tumor
0.0
481
Tumor
0.0
866
Normal
0.0
148
Normal
0.0
746
Normal
0.0
473
Tumor
0.0
1031
Tumor
0.0
574
Normal
0.0
396
Normal
0.0
564
Normal
0.0
912
Normal
0.0
468
Normal
0.0
285
Tumor
0.0
187
Tumor
0.0
743
Tumor
0.0
196
Normal
0.0
217
Tumor
0.0
913
Tumor
0.0
661
Tumor
0.0
272
Normal
0.0
728
Normal
0.0
911
Tumor
0.0
628
Normal
0.0
392
Normal
0.0
642
Normal
0.0
715
Tumor
0.0
695
Tumor
0.0
482
Normal
0.0
497
Tumor
0.0
456
Normal
0.0
354
Normal
0.0
513
Tumor
0.0
467
Tumor
0.0
136
Normal
0.0
664
Normal
0.0
956
Normal
N/A
422
Normal
0.0
428
Normal
0.0
462
Normal
0.0
483
Tumor
0.0
185
Tumor
0.0
426
Normal
0.0
452
Normal
0.0
192
Normal
0.0
915
Tumor
0.0
714
Normal
0.0
965
Tumor
0.0
327
Tumor
0.0
431
Tumor
0.0
421
Tumor
0.0
953
Tumor
0.0
262
Normal
0.0
141
Tumor
0.0
228
Normal
0.0
1045
Tumor
0.0
132
Normal
0.0
271
Tumor
0.0
224
Normal
0.0
314
Normal
0.0
222
Normal
0.0
918
Normal
0.0
386
Normal
0.0
221
Tumor
0.0
126
Normal
0.0
212
Normal
0.0
943
Tumor
-0.1
533
Tumor
-0.1
268
Normal
-0.1
465
Tumor
-0.1
738
Normal
-0.1
312
Normal
-0.1
232
Normal
-0.1
415
Tumor
-0.1
433
Tumor
-0.1
278
Normal
-0.1
395
Tumor
-0.1
211
Tumor
-0.1
414
Normal
-0.1
388
Normal
-0.1
214
Normal
-0.1
258
Normal
-0.1
647
Tumor
-0.1
952
Normal
-0.1
663
Tumor
-0.1
355
Tumor
-0.1
111
Normal
-0.1
387
Tumor
-0.1
284
Normal
-0.1
744
Normal
-0.1
451
Tumor
-0.1
277
Tumor
-0.1
925
Tumor
-0.1
145
Tumor
-0.1
383
Tumor
-0.1
135
Tumor
-0.1
515
Tumor
-0.1
461
Tumor
-0.1
955
Tumor
-0.1
113
Tumor
-0.1
365
Tumor
-0.1
865
Tumor
-0.1
777
Tumor
-0.1
883
Tumor
-0.2
114
Normal
-0.2
785
Tumor
-0.2
298
Normal
-0.2
161
Tumor
-0.2
128
Normal
-0.2
423
Tumor
-0.2
297
Tumor
-0.2
127
Tumor
-0.2
474
Normal
-0.2
977
Tumor
-0.2
171
Tumor
-0.2
427
Tumor
-0.2
137
Tumor
-0.2
1013
Tumor
-0.2
425
Tumor
-0.2
455
Tumor
-0.2
445
Tumor
-0.2
443
Tumor
-0.2
267
Tumor
-0.2
261
Tumor
-0.2
112
Tumor
-0.3
147
Tumor
-0.3
375
Tumor
-0.3
131
Tumor
-0.3
951
Tumor
-0.4
231
Tumor
-0.4
741
Tumor
-0.4
123
Tumor
-0.4
477
Tumor
-0.5
737
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.