We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB43 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
105.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
85.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
69.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
69.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
69.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
57.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
56.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
53.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
53.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
53.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
51.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
51.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
51.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
51.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
50.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
49.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
49.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
47.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
47.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
45.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
45.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
45.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
45.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
44.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
44.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
44.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
43.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
43.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
43.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
42.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
40.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
40.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
40.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
40.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
39.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
39.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
37.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
37.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
37.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
37.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
37.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
37.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
37.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
35.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
35.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
35.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
34.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
34.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
33.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
33.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
33.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
31.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
29.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
27.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
24.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB43 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.4
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
57.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
53.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
51.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
49.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
47.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
37.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
36.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
33.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
33.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
30.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
29.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
0.9
727
Tumor
0.8
937
Tumor
0.7
125
Tumor
0.7
487
Tumor
0.7
957
Tumor
0.7
445
Tumor
0.6
147
Tumor
0.6
523
Tumor
0.6
573
Tumor
0.6
1027
Tumor
0.6
851
Tumor
0.5
1025
Tumor
0.5
755
Tumor
0.5
567
Tumor
0.5
477
Tumor
0.5
553
Tumor
0.5
435
Tumor
0.5
524
Normal
0.4
1043
Tumor
0.4
343
Tumor
0.4
921
Tumor
0.4
471
Tumor
0.4
857
Tumor
0.4
497
Tumor
0.4
554
Normal
0.4
557
Tumor
0.4
981
Tumor
0.4
463
Tumor
0.4
1044
Normal
0.3
478
Normal
0.3
536
Normal
0.3
286
Normal
0.3
368
Normal
0.3
715
Tumor
0.3
915
Tumor
0.3
257
Tumor
0.3
538
Normal
0.3
943
Tumor
0.3
537
Tumor
0.3
1028
Normal
0.3
873
Tumor
0.3
517
Tumor
0.3
724
Normal
0.3
778
Normal
0.3
685
Tumor
0.3
1026
Normal
0.3
443
Tumor
0.3
951
Tumor
0.3
698
Normal
0.3
135
Tumor
0.3
1046
Normal
0.3
545
Tumor
0.3
191
Tumor
0.3
526
Normal
0.3
926
Normal
0.2
558
Normal
0.2
425
Tumor
0.2
1013
Tumor
0.2
954
Normal
0.2
433
Tumor
0.2
481
Tumor
0.2
697
Tumor
0.2
488
Normal
0.2
737
Tumor
0.2
528
Normal
0.2
142
Normal
0.2
923
Tumor
0.2
498
Normal
0.2
145
Tumor
0.2
395
Tumor
0.2
493
Tumor
0.2
916
Normal
0.2
513
Tumor
0.2
221
Tumor
0.2
817
Tumor
0.2
977
Tumor
0.2
448
Normal
0.2
878
Normal
0.2
617
Tumor
0.2
218
Normal
0.2
195
Tumor
0.2
518
Normal
0.2
696
Normal
0.2
636
Normal
0.2
1014
Normal
0.2
852
Normal
0.2
514
Normal
0.2
616
Normal
0.2
713
Tumor
0.2
376
Normal
0.2
917
Tumor
0.2
217
Tumor
0.2
861
Tumor
0.2
1032
Normal
0.2
1015
Tumor
0.2
865
Tumor
0.2
515
Tumor
0.2
327
Tumor
0.2
672
Normal
0.2
534
Normal
0.2
546
Normal
0.2
112
Tumor
0.2
527
Tumor
0.2
1041
Tumor
0.2
332
Normal
0.2
473
Tumor
0.2
1016
Normal
0.2
492
Normal
0.2
187
Tumor
0.2
283
Tumor
0.2
285
Tumor
0.2
1021
Tumor
0.2
1022
Normal
0.2
866
Normal
0.1
723
Tumor
0.1
818
Normal
0.1
186
Normal
0.1
563
Tumor
0.1
384
Normal
0.1
635
Tumor
0.1
984
Normal
0.1
223
Tumor
0.1
342
Normal
0.1
756
Normal
0.1
482
Normal
0.1
228
Normal
0.1
746
Normal
0.1
484
Normal
0.1
862
Normal
0.1
124
Normal
0.1
823
Tumor
0.1
924
Normal
0.1
352
Normal
0.1
641
Tumor
0.1
1042
Normal
0.1
982
Normal
0.1
447
Tumor
0.1
451
Tumor
0.1
363
Tumor
0.1
392
Normal
0.1
572
Normal
0.1
341
Tumor
0.1
568
Normal
0.1
465
Tumor
0.1
351
Tumor
0.1
452
Normal
0.1
938
Normal
0.1
462
Normal
0.1
494
Normal
0.1
922
Normal
0.1
918
Normal
0.1
268
Normal
0.1
883
Tumor
0.1
864
Normal
0.1
912
Normal
0.1
231
Tumor
0.1
944
Normal
0.1
627
Tumor
0.1
314
Normal
0.1
284
Normal
0.1
824
Normal
0.1
113
Tumor
0.1
483
Tumor
0.1
863
Tumor
0.1
882
Normal
0.1
393
Tumor
0.1
744
Normal
0.1
966
Normal
0.1
963
Tumor
0.1
721
Tumor
0.1
813
Tumor
0.1
953
Tumor
0.1
686
Normal
0.1
354
Normal
0.1
968
Normal
0.1
722
Normal
0.1
412
Normal
0.1
647
Tumor
0.1
858
Normal
0.1
464
Normal
0.1
358
Normal
0.1
212
Normal
0.1
978
Normal
0.1
171
Tumor
0.1
728
Normal
0.1
983
Tumor
0.1
964
Normal
0.1
213
Tumor
0.1
958
Normal
0.1
816
Normal
0.1
965
Tumor
0.1
446
Normal
0.1
162
Normal
0.1
148
Normal
0.1
564
Normal
0.1
628
Normal
0.1
131
Tumor
0.1
975
Tumor
0.0
648
Normal
0.0
956
Normal
0.0
618
Normal
0.0
742
Normal
0.0
474
Normal
0.0
436
Normal
0.0
642
Normal
0.0
525
Tumor
0.0
224
Normal
0.0
128
Normal
0.0
415
Tumor
0.0
357
Tumor
0.0
356
Normal
0.0
574
Normal
0.0
1031
Tumor
0.0
271
Tumor
0.0
815
Tumor
0.0
976
Normal
0.0
472
Normal
0.0
533
Tumor
0.0
426
Normal
0.0
786
Normal
0.0
884
Normal
0.0
364
Normal
0.0
421
Tumor
0.0
434
Normal
0.0
261
Tumor
0.0
664
Normal
0.0
127
Tumor
0.0
111
Normal
0.0
172
Normal
0.0
615
Tumor
0.0
925
Tumor
0.0
396
Normal
0.0
146
Normal
0.0
278
Normal
0.0
422
Normal
0.0
432
Normal
0.0
466
Normal
0.0
196
Normal
0.0
666
Normal
0.0
126
Normal
0.0
444
Normal
0.0
232
Normal
0.0
383
Tumor
0.0
114
Normal
0.0
431
Tumor
0.0
141
Tumor
0.0
416
Normal
0.0
132
Normal
0.0
952
Normal
0.0
714
Normal
0.0
913
Tumor
0.0
262
Normal
0.0
467
Tumor
0.0
671
Tumor
0.0
222
Normal
0.0
785
Tumor
0.0
516
Normal
0.0
188
Normal
0.0
413
Tumor
0.0
955
Tumor
0.0
411
Tumor
0.0
328
Normal
0.0
344
Normal
0.0
662
Normal
0.0
388
Normal
0.0
914
Normal
0.0
414
Normal
0.0
716
Normal
0.0
391
Tumor
-0.1
258
Normal
-0.1
877
Tumor
-0.1
456
Normal
-0.1
385
Tumor
-0.1
331
Tumor
-0.1
362
Normal
-0.1
361
Tumor
-0.1
868
Normal
-0.1
911
Tumor
-0.1
313
Tumor
-0.1
185
Tumor
-0.1
468
Normal
-0.1
123
Tumor
-0.1
665
Tumor
-0.1
366
Normal
-0.1
424
Normal
-0.1
272
Normal
-0.1
312
Normal
-0.1
874
Normal
-0.1
738
Normal
-0.1
1045
Tumor
-0.1
814
Normal
-0.1
137
Tumor
-0.1
743
Tumor
-0.1
535
Tumor
-0.1
136
Normal
-0.1
138
Normal
-0.1
355
Tumor
-0.1
214
Normal
-0.1
298
Normal
-0.1
277
Tumor
-0.1
881
Tumor
-0.1
867
Tumor
-0.1
227
Tumor
-0.1
394
Normal
-0.2
571
Tumor
-0.2
353
Tumor
-0.2
386
Normal
-0.2
161
Tumor
-0.2
461
Tumor
-0.2
423
Tumor
-0.2
663
Tumor
-0.2
695
Tumor
-0.2
777
Tumor
-0.2
491
Tumor
-0.2
365
Tumor
-0.2
428
Normal
-0.2
297
Tumor
-0.2
967
Tumor
-0.2
267
Tumor
-0.2
311
Tumor
-0.2
741
Tumor
-0.2
455
Tumor
-0.3
367
Tumor
-0.3
192
Normal
-0.3
661
Tumor
-0.3
387
Tumor
-0.3
375
Tumor
-0.3
427
Tumor
-0.4
211
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
