MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.7 nTPM
HPA Brain:55.3 nTPM
GTEx:8.7 nTPM
FANTOM5:42.0 Scaled Tags Per Million
Pig:27.3 nTPM
Mouse:40.0 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.3
2019 Male, age 18, unknown 58.6
2219 Male, age 76, both hemispheres 51.2
2411 Female, age 72, unknown 49.2
1833 Male, age 53, unknown 48.6
2666 Male, age 74, left hemisphere 48.5
1827 Male, age 72, unknown 45.7
2828 Female, age 72, unknown 45.4
2586 Male, age 75, left hemisphere 42.7
1870 Female, age 42, unknown 41.9
1830 Male, age 51, unknown 41.2
Dorsal raphe nucleus
nTPM: 40.4
1828 Male, age 53, unknown 45.1
2750 Male, age 76, both hemispheres 41.2
2047 Male, age 72, unknown 40.5
2016 Female, age 72, unknown 38.4
2298 Female, age 72, unknown 36.7
Inferior colliculus
nTPM: 46.7
1890 Male, age 53, unknown 48.6
2849 Male, age 72, unknown 47.0
1848 Female, age 42, unknown 45.9
2097 Female, age 72, unknown 45.2
Median raphe nucleus
nTPM: 38.3
2220 Male, age 76, midline 38.3
Periaquaductal grey, anterior
nTPM: 45.9
2502 Female, age 75, unknown 47.6
1795 Male, age 51, unknown 46.0
1947 Male, age 18, unknown 44.0
Periaquaductal grey, dorsal
nTPM: 41.6
1840 Male, age 53, unknown 48.4
2464 Female, age 72, unknown 41.2
1831 Male, age 72, unknown 38.9
2850 Male, age 76, both hemispheres 37.9
Periaquaductal grey, lateral
nTPM: 42.0
2140 Male, age 76, both hemispheres 43.9
2272 Male, age 74, both hemispheres 41.6
2053 Male, age 18, unknown 40.5
Pretectal area
nTPM: 49.7
2667 Female, age 75, unknown 62.3
1815 Male, age 53, unknown 60.6
1944 Female, age 72, unknown 57.2
1816 Male, age 51, unknown 56.1
1817 Female, age 42, unknown 54.6
2316 Male, age 76, right hemisphere 52.6
2007 Male, age 72, unknown 52.5
2224 Female, age 72, unknown 42.7
2407 Male, age 75, both hemispheres 37.5
2825 Male, age 18, unknown 36.6
2273 Male, age 74, both hemispheres 34.6
Red nucleus
nTPM: 43.1
2785 Male, age 18, unknown 49.9
1904 Male, age 53, unknown 46.3
1954 Female, age 42, unknown 46.2
2588 Male, age 74, left hemisphere 45.6
2769 Male, age 72, unknown 43.6
2584 Male, age 75, left hemisphere 43.3
2503 Female, age 72, unknown 42.5
2823 Male, age 76, right hemisphere 41.8
1865 Male, age 51, unknown 40.4
1821 Female, age 72, unknown 40.1
2227 Male, age 72, unknown 39.3
2725 Female, age 75, unknown 37.8
Substantia nigra
nTPM: 55.3
2409 Female, age 72, unknown 96.2
2665 Male, age 74, both hemispheres 61.7
1851 Male, age 51, unknown 58.3
1889 Female, age 72, unknown 57.0
1916 Female, age 42, unknown 54.6
2699 Male, age 18, unknown 53.7
2241 Male, age 72, unknown 50.3
2583 Male, age 75, right hemisphere 47.8
1941 Male, age 53, unknown 39.5
2590 Female, age 75, unknown 34.3
Superior colliculus
nTPM: 47.1
2668 Female, age 75, unknown 61.7
2087 Female, age 72, unknown 55.0
1995 Male, age 72, unknown 53.4
1895 Male, age 76, right hemisphere 51.0
2261 Male, age 18, unknown 46.0
2587 Male, age 74, left hemisphere 45.0
1913 Female, age 42, unknown 44.9
1839 Male, age 51, unknown 40.6
1796 Male, age 53, unknown 40.5
2664 Male, age 75, both hemispheres 33.3
Ventral tegmental area
nTPM: 46.7
1942 Male, age 51, unknown 51.3
2410 Female, age 72, unknown 49.9
2223 Female, age 72, unknown 48.2
1915 Female, age 42, unknown 47.1
2218 Male, age 76, both hemispheres 45.5
2021 Male, age 53, unknown 38.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.7
Samples: 139

Max nTPM: 13.4
Min nTPM: 6.3
Std nTPM: 1.3
Median nTPM: 8.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 13.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 13.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 12.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 11.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 11.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 11.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 11.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 10.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 10.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 10.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.0
FF:10158-103A5 76 years, female 42.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.2
Samples: 4

Max nTPM: 28.9
Min nTPM: 20.2
Sample A Female 20.2
Sample B Female 22.0
Sample C Male 25.5
Sample D Male 28.9
Midbrain
nTPM: 27.3
Samples: 4

Max nTPM: 30.1
Min nTPM: 23.8
Sample A Female 30.1
Sample B Female 23.8
Sample C Male 26.4
Sample D Male 28.9
Periaqueductal gray
nTPM: 22.4
Samples: 3

Max nTPM: 24.1
Min nTPM: 20.5
Sample B Female 24.1
Sample C Male 20.5
Sample D Male 22.6
Superior colliculi
nTPM: 22.3
Samples: 4

Max nTPM: 26.5
Min nTPM: 17.0
Sample A Female 20.8
Sample B Female 17.0
Sample C Male 24.7
Sample D Male 26.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 40.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.0
Samples: 4

Max nTPM: 42.0
Min nTPM: 37.5
Sample A Male 37.5
Sample B Male 39.8
Sample C Female 42.0
Sample D Female 40.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
69407523 Antisense, RP_050414_01_H01, Mouse strain C57BL/6J (56 days, male) 2.1

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