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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CORO1B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
149.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
149.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
145.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
130.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
123.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
118.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
114.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
102.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
102.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
102.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
95.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
95.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
91.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
88.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
88.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
87.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
86.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
86.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
85.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
85.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
85.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
84.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
83.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
81.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
79.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
78.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
77.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
77.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
76.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
75.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
75.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
75.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
75.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
74.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
74.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
73.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
73.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
72.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
71.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
71.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
71.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
70.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
69.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
68.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
68.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
67.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
67.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
66.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
66.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
65.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
65.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
63.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
63.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
63.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
63.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
62.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
62.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
62.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
60.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
60.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
59.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
59.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
58.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
58.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
58.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
58.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
57.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
57.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
57.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
56.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
56.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
56.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
56.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
56.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
56.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
56.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
56.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
55.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
55.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
55.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
54.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
54.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
54.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
54.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
53.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
53.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
53.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
53.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
53.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
53.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
53.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
53.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
52.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
52.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
52.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
51.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
51.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
51.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
51.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
50.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
50.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
50.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
50.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
50.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
50.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
50.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
49.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
49.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
49.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
49.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
49.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
49.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
49.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
49.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
48.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
48.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
48.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
48.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
47.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
47.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
47.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
47.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
47.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
47.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
47.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
47.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
46.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
46.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
46.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
46.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
46.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
46.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
46.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
45.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
45.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
45.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
45.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
45.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
44.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
44.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
44.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
44.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
44.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
43.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
43.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
43.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
43.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
43.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
42.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
42.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
42.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
42.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
42.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
42.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
42.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
42.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
41.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
41.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
41.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
41.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
40.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
40.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
39.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
39.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
39.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
39.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
38.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
38.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
38.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
37.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
37.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
37.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
36.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
36.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
36.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
36.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
36.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
36.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
35.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
35.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
35.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
35.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
35.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
34.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
34.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
33.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
33.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
32.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
32.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
31.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
31.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
31.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
30.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
30.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
29.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
27.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
26.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
25.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
21.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CORO1B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.3
Number of samples
231
Samples
Sample
Description
TPM
DO45191
0 years, female, NA, stage:2, alive, 1200 days
215.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
96.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
93.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
89.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
76.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
73.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
72.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
72.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
70.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
70.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
69.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
67.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
67.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
65.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
64.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
64.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
64.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
62.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
62.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
61.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
59.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
59.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
59.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
57.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
57.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
56.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
54.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
52.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
52.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
51.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
50.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
49.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
49.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
48.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
48.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
48.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
48.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
47.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
46.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
45.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
45.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
44.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
44.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
43.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
43.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
43.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
42.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
42.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
42.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
41.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
41.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
40.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
40.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
40.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
40.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
39.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
39.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
38.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
37.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
37.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
37.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
37.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
36.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
36.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
35.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
34.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
34.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
32.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
31.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
31.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
29.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
2.3
873
Tumor
1.7
473
Tumor
1.5
135
Tumor
1.3
883
Tumor
1.3
513
Tumor
1.0
1027
Tumor
0.7
697
Tumor
0.6
527
Tumor
0.5
257
Tumor
0.5
147
Tumor
0.5
137
Tumor
0.4
863
Tumor
0.4
737
Tumor
0.3
492
Normal
0.3
518
Normal
0.3
435
Tumor
0.3
125
Tumor
0.3
777
Tumor
0.3
983
Tumor
0.3
778
Normal
0.3
952
Normal
0.3
1021
Tumor
0.3
524
Normal
0.3
851
Tumor
0.3
498
Normal
0.2
981
Tumor
0.2
434
Normal
0.2
415
Tumor
0.2
741
Tumor
0.2
185
Tumor
0.2
443
Tumor
0.2
745
Tumor
0.2
635
Tumor
0.2
914
Normal
0.2
554
Normal
0.2
494
Normal
0.2
661
Tumor
0.2
954
Normal
0.2
526
Normal
0.2
515
Tumor
0.2
327
Tumor
0.1
536
Normal
0.1
283
Tumor
0.1
728
Normal
0.1
425
Tumor
0.1
1028
Normal
0.1
538
Normal
0.1
432
Normal
0.1
516
Normal
0.1
271
Tumor
0.1
412
Normal
0.1
478
Normal
0.1
955
Tumor
0.1
672
Normal
0.1
262
Normal
0.1
956
Normal
0.1
823
Tumor
0.1
966
Normal
0.1
471
Tumor
0.1
352
Normal
0.1
136
Normal
0.1
142
Normal
0.1
514
Normal
0.1
721
Tumor
0.1
138
Normal
0.1
537
Tumor
0.1
738
Normal
0.1
218
Normal
0.1
553
Tumor
0.1
964
Normal
0.1
878
Normal
0.1
1045
Tumor
0.1
297
Tumor
0.1
124
Normal
0.1
286
Normal
0.0
1026
Normal
0.0
272
Normal
0.0
698
Normal
0.0
557
Tumor
0.0
268
Normal
0.0
223
Tumor
0.0
662
Normal
0.0
227
Tumor
0.0
146
Normal
0.0
744
Normal
0.0
944
Normal
0.0
686
Normal
0.0
212
Normal
0.0
528
Normal
0.0
867
Tumor
0.0
558
Normal
0.0
937
Tumor
0.0
913
Tumor
0.0
923
Tumor
0.0
444
Normal
0.0
727
Tumor
0.0
363
Tumor
0.0
685
Tumor
0.0
978
Normal
0.0
627
Tumor
0.0
963
Tumor
0.0
468
Normal
0.0
344
Normal
0.0
824
Normal
0.0
968
Normal
0.0
214
Normal
0.0
816
Normal
0.0
358
Normal
0.0
488
Normal
0.0
484
Normal
0.0
814
Normal
0.0
858
Normal
0.0
474
Normal
0.0
224
Normal
0.0
448
Normal
0.0
188
Normal
0.0
298
Normal
0.0
852
Normal
0.0
493
Tumor
0.0
472
Normal
0.0
436
Normal
0.0
916
Normal
0.0
1031
Tumor
0.0
232
Normal
0.0
918
Normal
0.0
491
Tumor
0.0
755
Tumor
0.0
866
Normal
0.0
1041
Tumor
0.0
483
Tumor
0.0
111
Normal
0.0
546
Normal
0.0
132
Normal
0.0
664
Normal
0.0
756
Normal
0.0
456
Normal
0.0
481
Tumor
0.0
976
Normal
0.0
284
Normal
0.0
911
Tumor
0.0
313
Tumor
0.0
746
Normal
0.0
455
Tumor
0.0
362
Normal
0.0
924
Normal
0.0
786
Normal
0.0
258
Normal
-0.1
356
Normal
-0.1
696
Normal
-0.1
874
Normal
-0.1
723
Tumor
-0.1
114
Normal
-0.1
368
Normal
-0.1
312
Normal
-0.1
925
Tumor
-0.1
387
Tumor
-0.1
534
Normal
-0.1
1044
Normal
-0.1
864
Normal
-0.1
917
Tumor
-0.1
525
Tumor
-0.1
446
Normal
-0.1
868
Normal
-0.1
1015
Tumor
-0.1
211
Tumor
-0.1
862
Normal
-0.1
857
Tumor
-0.1
162
Normal
-0.1
228
Normal
-0.1
938
Normal
-0.1
354
Normal
-0.1
926
Normal
-0.1
278
Normal
-0.1
884
Normal
-0.1
616
Normal
-0.1
714
Normal
-0.1
447
Tumor
-0.1
261
Tumor
-0.1
713
Tumor
-0.1
975
Tumor
-0.1
1022
Normal
-0.1
392
Normal
-0.1
366
Normal
-0.1
666
Normal
-0.1
1016
Normal
-0.1
535
Tumor
-0.1
126
Normal
-0.1
785
Tumor
-0.1
217
Tumor
-0.1
882
Normal
-0.1
416
Normal
-0.1
716
Normal
-0.1
482
Normal
-0.1
464
Normal
-0.1
984
Normal
-0.1
912
Normal
-0.1
564
Normal
-0.1
815
Tumor
-0.1
422
Normal
-0.1
628
Normal
-0.1
394
Normal
-0.1
332
Normal
-0.1
196
Normal
-0.1
328
Normal
-0.1
128
Normal
-0.1
813
Tumor
-0.1
421
Tumor
-0.1
958
Normal
-0.1
395
Tumor
-0.1
141
Tumor
-0.1
148
Normal
-0.1
572
Normal
-0.1
1014
Normal
-0.1
922
Normal
-0.1
426
Normal
-0.2
982
Normal
-0.2
342
Normal
-0.2
615
Tumor
-0.2
951
Tumor
-0.2
365
Tumor
-0.2
636
Normal
-0.2
1043
Tumor
-0.2
311
Tumor
-0.2
957
Tumor
-0.2
462
Normal
-0.2
353
Tumor
-0.2
466
Normal
-0.2
172
Normal
-0.2
618
Normal
-0.2
742
Normal
-0.2
642
Normal
-0.2
424
Normal
-0.2
431
Tumor
-0.2
451
Tumor
-0.2
1042
Normal
-0.2
423
Tumor
-0.2
1025
Tumor
-0.2
574
Normal
-0.2
477
Tumor
-0.2
433
Tumor
-0.2
648
Normal
-0.2
915
Tumor
-0.2
222
Normal
-0.2
568
Normal
-0.2
341
Tumor
-0.2
192
Normal
-0.2
818
Normal
-0.2
465
Tumor
-0.2
221
Tumor
-0.2
665
Tumor
-0.2
641
Tumor
-0.2
921
Tumor
-0.2
414
Normal
-0.2
977
Tumor
-0.2
533
Tumor
-0.2
364
Normal
-0.2
722
Normal
-0.2
445
Tumor
-0.2
461
Tumor
-0.2
467
Tumor
-0.2
376
Normal
-0.2
186
Normal
-0.2
195
Tumor
-0.2
388
Normal
-0.2
213
Tumor
-0.2
396
Normal
-0.3
386
Normal
-0.3
861
Tumor
-0.3
1032
Normal
-0.3
881
Tumor
-0.3
967
Tumor
-0.3
384
Normal
-0.3
145
Tumor
-0.3
428
Normal
-0.3
573
Tumor
-0.3
1046
Normal
-0.3
1013
Tumor
-0.3
724
Normal
-0.3
314
Normal
-0.3
487
Tumor
-0.3
563
Tumor
-0.3
375
Tumor
-0.3
452
Normal
-0.3
545
Tumor
-0.3
191
Tumor
-0.3
817
Tumor
-0.3
715
Tumor
-0.3
647
Tumor
-0.3
355
Tumor
-0.3
357
Tumor
-0.3
171
Tumor
-0.4
131
Tumor
-0.4
427
Tumor
-0.4
187
Tumor
-0.4
865
Tumor
-0.4
943
Tumor
-0.4
361
Tumor
-0.4
343
Tumor
-0.4
411
Tumor
-0.4
113
Tumor
-0.4
385
Tumor
-0.4
367
Tumor
-0.4
463
Tumor
-0.4
571
Tumor
-0.4
497
Tumor
-0.4
383
Tumor
-0.5
953
Tumor
-0.5
277
Tumor
-0.5
161
Tumor
-0.5
877
Tumor
-0.5
663
Tumor
-0.5
517
Tumor
-0.5
267
Tumor
-0.5
127
Tumor
-0.5
413
Tumor
-0.6
231
Tumor
-0.6
617
Tumor
-0.6
285
Tumor
-0.6
671
Tumor
-0.6
331
Tumor
-0.7
743
Tumor
-0.7
391
Tumor
-0.7
567
Tumor
-0.7
351
Tumor
-0.7
695
Tumor
-0.8
523
Tumor
-0.8
123
Tumor
-0.8
393
Tumor
-0.9
965
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
