We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAD9A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAD9A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.3
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
72.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
57.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
52.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
51.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
46.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
45.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
44.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
42.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
41.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
41.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
34.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
33.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
32.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
2.0
473
Tumor
1.4
277
Tumor
1.1
463
Tumor
1.1
1045
Tumor
1.0
873
Tumor
1.0
125
Tumor
0.9
865
Tumor
0.9
635
Tumor
0.9
217
Tumor
0.8
313
Tumor
0.7
147
Tumor
0.7
743
Tumor
0.7
814
Normal
0.7
813
Tumor
0.7
221
Tumor
0.7
343
Tumor
0.7
737
Tumor
0.7
1043
Tumor
0.7
358
Normal
0.6
455
Tumor
0.6
113
Tumor
0.6
126
Normal
0.6
124
Normal
0.6
342
Normal
0.6
114
Normal
0.6
741
Tumor
0.6
727
Tumor
0.6
376
Normal
0.5
924
Normal
0.5
697
Tumor
0.5
663
Tumor
0.5
285
Tumor
0.5
366
Normal
0.5
161
Tumor
0.5
127
Tumor
0.5
186
Normal
0.5
258
Normal
0.5
351
Tumor
0.5
451
Tumor
0.5
647
Tumor
0.5
331
Tumor
0.4
863
Tumor
0.4
357
Tumor
0.4
926
Normal
0.4
468
Normal
0.4
641
Tumor
0.4
467
Tumor
0.4
431
Tumor
0.4
416
Normal
0.4
615
Tumor
0.4
465
Tumor
0.4
922
Normal
0.4
361
Tumor
0.4
271
Tumor
0.4
364
Normal
0.4
883
Tumor
0.4
344
Normal
0.4
423
Tumor
0.4
213
Tumor
0.4
356
Normal
0.4
627
Tumor
0.4
648
Normal
0.3
391
Tumor
0.3
513
Tumor
0.3
267
Tumor
0.3
262
Normal
0.3
341
Tumor
0.3
447
Tumor
0.3
232
Normal
0.3
132
Normal
0.3
297
Tumor
0.3
537
Tumor
0.3
368
Normal
0.3
443
Tumor
0.3
172
Normal
0.3
146
Normal
0.3
354
Normal
0.3
535
Tumor
0.3
353
Tumor
0.3
148
Normal
0.3
171
Tumor
0.3
427
Tumor
0.3
111
Normal
0.3
913
Tumor
0.3
471
Tumor
0.3
428
Normal
0.3
414
Normal
0.3
918
Normal
0.3
487
Tumor
0.2
413
Tumor
0.2
517
Tumor
0.2
128
Normal
0.2
136
Normal
0.2
425
Tumor
0.2
724
Normal
0.2
435
Tumor
0.2
911
Tumor
0.2
422
Normal
0.2
777
Tumor
0.2
665
Tumor
0.2
268
Normal
0.2
162
Normal
0.2
387
Tumor
0.2
195
Tumor
0.2
515
Tumor
0.2
257
Tumor
0.2
426
Normal
0.2
227
Tumor
0.2
497
Tumor
0.2
466
Normal
0.2
523
Tumor
0.2
1016
Normal
0.2
261
Tumor
0.2
617
Tumor
0.2
953
Tumor
0.1
278
Normal
0.1
983
Tumor
0.1
1013
Tumor
0.1
312
Normal
0.1
527
Tumor
0.1
362
Normal
0.1
365
Tumor
0.1
722
Normal
0.1
452
Normal
0.1
666
Normal
0.1
191
Tumor
0.1
456
Normal
0.1
411
Tumor
0.1
192
Normal
0.1
211
Tumor
0.1
123
Tumor
0.1
314
Normal
0.1
671
Tumor
0.1
222
Normal
0.1
461
Tumor
0.1
818
Normal
0.1
951
Tumor
0.1
445
Tumor
0.1
188
Normal
0.1
964
Normal
0.1
412
Normal
0.1
352
Normal
0.1
977
Tumor
0.1
328
Normal
0.1
914
Normal
0.1
858
Normal
0.1
976
Normal
0.1
636
Normal
0.0
433
Tumor
0.0
661
Tumor
0.0
223
Tumor
0.0
355
Tumor
0.0
573
Tumor
0.0
464
Normal
0.0
218
Normal
0.0
415
Tumor
0.0
384
Normal
0.0
571
Tumor
0.0
272
Normal
0.0
421
Tumor
0.0
472
Normal
0.0
642
Normal
0.0
967
Tumor
0.0
298
Normal
0.0
138
Normal
0.0
816
Normal
0.0
424
Normal
0.0
1046
Normal
0.0
921
Tumor
0.0
616
Normal
0.0
695
Tumor
0.0
474
Normal
0.0
187
Tumor
0.0
755
Tumor
0.0
982
Normal
0.0
185
Tumor
0.0
393
Tumor
0.0
878
Normal
0.0
943
Tumor
0.0
525
Tumor
-0.1
686
Normal
-0.1
477
Tumor
-0.1
957
Tumor
-0.1
981
Tumor
-0.1
231
Tumor
-0.1
965
Tumor
-0.1
283
Tumor
-0.1
137
Tumor
-0.1
1014
Normal
-0.1
385
Tumor
-0.1
367
Tumor
-0.1
672
Normal
-0.1
882
Normal
-0.1
311
Tumor
-0.1
916
Normal
-0.1
698
Normal
-0.1
628
Normal
-0.1
824
Normal
-0.1
491
Tumor
-0.1
135
Tumor
-0.1
1027
Tumor
-0.1
723
Tumor
-0.1
884
Normal
-0.1
536
Normal
-0.1
662
Normal
-0.1
434
Normal
-0.1
196
Normal
-0.1
618
Normal
-0.1
533
Tumor
-0.1
526
Normal
-0.2
664
Normal
-0.2
923
Tumor
-0.2
448
Normal
-0.2
728
Normal
-0.2
984
Normal
-0.2
545
Tumor
-0.2
915
Tumor
-0.2
745
Tumor
-0.2
483
Tumor
-0.2
518
Normal
-0.2
925
Tumor
-0.2
966
Normal
-0.2
383
Tumor
-0.2
286
Normal
-0.2
214
Normal
-0.2
1015
Tumor
-0.2
482
Normal
-0.2
332
Normal
-0.2
944
Normal
-0.2
714
Normal
-0.2
212
Normal
-0.2
917
Tumor
-0.2
978
Normal
-0.2
557
Tumor
-0.2
224
Normal
-0.2
738
Normal
-0.2
462
Normal
-0.2
874
Normal
-0.2
436
Normal
-0.2
228
Normal
-0.2
142
Normal
-0.2
284
Normal
-0.2
493
Tumor
-0.2
141
Tumor
-0.2
938
Normal
-0.2
572
Normal
-0.2
375
Tumor
-0.3
568
Normal
-0.3
1022
Normal
-0.3
786
Normal
-0.3
968
Normal
-0.3
685
Tumor
-0.3
563
Tumor
-0.3
746
Normal
-0.3
952
Normal
-0.3
1026
Normal
-0.3
363
Tumor
-0.3
975
Tumor
-0.3
574
Normal
-0.3
444
Normal
-0.3
861
Tumor
-0.3
756
Normal
-0.3
867
Tumor
-0.3
912
Normal
-0.3
514
Normal
-0.3
516
Normal
-0.3
145
Tumor
-0.3
956
Normal
-0.3
488
Normal
-0.3
484
Normal
-0.4
567
Tumor
-0.4
785
Tumor
-0.4
744
Normal
-0.4
877
Tumor
-0.4
396
Normal
-0.4
958
Normal
-0.4
963
Tumor
-0.4
696
Normal
-0.4
528
Normal
-0.4
866
Normal
-0.4
881
Tumor
-0.4
1044
Normal
-0.4
721
Tumor
-0.4
742
Normal
-0.4
481
Tumor
-0.4
868
Normal
-0.4
864
Normal
-0.4
564
Normal
-0.4
494
Normal
-0.4
558
Normal
-0.4
1032
Normal
-0.4
713
Tumor
-0.4
851
Tumor
-0.4
937
Tumor
-0.4
498
Normal
-0.5
1042
Normal
-0.5
395
Tumor
-0.5
716
Normal
-0.5
388
Normal
-0.5
446
Normal
-0.5
534
Normal
-0.5
815
Tumor
-0.5
392
Normal
-0.5
478
Normal
-0.5
862
Normal
-0.5
394
Normal
-0.5
778
Normal
-0.5
432
Normal
-0.5
1021
Tumor
-0.5
492
Normal
-0.6
546
Normal
-0.6
386
Normal
-0.6
1028
Normal
-0.6
954
Normal
-0.6
852
Normal
-0.6
955
Tumor
-0.6
1031
Tumor
-0.6
554
Normal
-0.6
327
Tumor
-0.6
524
Normal
-0.6
715
Tumor
-0.6
553
Tumor
-0.6
538
Normal
-0.7
1025
Tumor
-0.7
131
Tumor
-0.7
857
Tumor
-0.8
1041
Tumor
-0.8
823
Tumor
-1.3
817
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
