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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCEAL1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
132.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
86.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
59.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
48.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
43.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
40.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
38.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
33.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
26.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCEAL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.5
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
107.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
80.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
75.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
66.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
63.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
58.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
35.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
32.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.7
977
Tumor
1.6
351
Tumor
1.3
861
Tumor
1.3
685
Tumor
1.2
497
Tumor
1.1
123
Tumor
1.1
951
Tumor
1.1
647
Tumor
1.1
741
Tumor
1.1
695
Tumor
1.1
313
Tumor
1.0
921
Tumor
1.0
171
Tumor
1.0
665
Tumor
0.9
965
Tumor
0.9
943
Tumor
0.9
881
Tumor
0.9
131
Tumor
0.9
277
Tumor
0.8
1031
Tumor
0.8
557
Tumor
0.8
411
Tumor
0.8
777
Tumor
0.8
981
Tumor
0.7
261
Tumor
0.7
785
Tumor
0.7
737
Tumor
0.7
724
Normal
0.7
937
Tumor
0.7
923
Tumor
0.6
285
Tumor
0.6
721
Tumor
0.6
523
Tumor
0.6
357
Tumor
0.6
493
Tumor
0.6
533
Tumor
0.6
112
Tumor
0.6
814
Normal
0.6
817
Tumor
0.6
483
Tumor
0.6
525
Tumor
0.6
343
Tumor
0.6
715
Tumor
0.6
983
Tumor
0.6
857
Tumor
0.5
778
Normal
0.5
431
Tumor
0.5
465
Tumor
0.5
487
Tumor
0.5
815
Tumor
0.5
473
Tumor
0.5
957
Tumor
0.5
211
Tumor
0.5
975
Tumor
0.5
877
Tumor
0.4
481
Tumor
0.4
553
Tumor
0.4
231
Tumor
0.4
141
Tumor
0.4
865
Tumor
0.4
813
Tumor
0.4
915
Tumor
0.4
967
Tumor
0.4
1041
Tumor
0.4
863
Tumor
0.4
271
Tumor
0.4
443
Tumor
0.4
283
Tumor
0.4
545
Tumor
0.4
913
Tumor
0.4
341
Tumor
0.4
963
Tumor
0.3
311
Tumor
0.3
477
Tumor
0.3
433
Tumor
0.3
571
Tumor
0.3
463
Tumor
0.3
524
Normal
0.3
451
Tumor
0.3
873
Tumor
0.3
455
Tumor
0.3
527
Tumor
0.3
355
Tumor
0.3
727
Tumor
0.3
852
Normal
0.3
953
Tumor
0.3
1015
Tumor
0.3
883
Tumor
0.2
353
Tumor
0.2
145
Tumor
0.2
911
Tumor
0.2
354
Normal
0.2
444
Normal
0.2
185
Tumor
0.2
188
Normal
0.2
513
Tumor
0.2
1021
Tumor
0.2
135
Tumor
0.2
467
Tumor
0.2
344
Normal
0.2
917
Tumor
0.2
713
Tumor
0.2
127
Tumor
0.2
297
Tumor
0.2
498
Normal
0.2
491
Tumor
0.2
537
Tumor
0.2
743
Tumor
0.2
661
Tumor
0.2
161
Tumor
0.1
352
Normal
0.1
187
Tumor
0.1
976
Normal
0.1
554
Normal
0.1
696
Normal
0.1
148
Normal
0.1
574
Normal
0.1
538
Normal
0.1
445
Tumor
0.1
546
Normal
0.1
516
Normal
0.1
714
Normal
0.1
671
Tumor
0.1
383
Tumor
0.1
744
Normal
0.1
125
Tumor
0.1
984
Normal
0.1
186
Normal
0.1
515
Tumor
0.1
925
Tumor
0.1
978
Normal
0.0
958
Normal
0.0
823
Tumor
0.0
342
Normal
0.0
223
Tumor
0.0
816
Normal
0.0
471
Tumor
0.0
722
Normal
0.0
786
Normal
0.0
384
Normal
0.0
137
Tumor
0.0
172
Normal
0.0
954
Normal
0.0
358
Normal
0.0
663
Tumor
0.0
331
Tumor
0.0
966
Normal
0.0
1028
Normal
0.0
435
Tumor
0.0
563
Tumor
0.0
162
Normal
0.0
756
Normal
-0.1
534
Normal
-0.1
518
Normal
-0.1
364
Normal
-0.1
882
Normal
-0.1
136
Normal
-0.1
672
Normal
-0.1
982
Normal
-0.1
572
Normal
-0.1
146
Normal
-0.1
1025
Tumor
-0.1
686
Normal
-0.1
492
Normal
-0.1
267
Tumor
-0.1
138
Normal
-0.1
755
Tumor
-0.1
416
Normal
-0.1
738
Normal
-0.1
363
Tumor
-0.1
728
Normal
-0.2
1014
Normal
-0.2
867
Tumor
-0.2
924
Normal
-0.2
944
Normal
-0.2
461
Tumor
-0.2
716
Normal
-0.2
666
Normal
-0.2
528
Normal
-0.2
434
Normal
-0.2
858
Normal
-0.2
818
Normal
-0.2
824
Normal
-0.2
361
Tumor
-0.2
884
Normal
-0.2
468
Normal
-0.2
742
Normal
-0.2
918
Normal
-0.2
228
Normal
-0.2
517
Tumor
-0.2
878
Normal
-0.2
662
Normal
-0.2
968
Normal
-0.2
268
Normal
-0.2
558
Normal
-0.2
147
Tumor
-0.2
1032
Normal
-0.2
124
Normal
-0.2
362
Normal
-0.2
938
Normal
-0.2
514
Normal
-0.2
573
Tumor
-0.2
916
Normal
-0.3
964
Normal
-0.3
456
Normal
-0.3
478
Normal
-0.3
376
Normal
-0.3
1045
Tumor
-0.3
488
Normal
-0.3
327
Tumor
-0.3
312
Normal
-0.3
862
Normal
-0.3
366
Normal
-0.3
864
Normal
-0.3
1022
Normal
-0.3
912
Normal
-0.3
664
Normal
-0.3
447
Tumor
-0.3
874
Normal
-0.3
956
Normal
-0.3
866
Normal
-0.3
227
Tumor
-0.3
126
Normal
-0.3
955
Tumor
-0.3
412
Normal
-0.3
745
Tumor
-0.3
526
Normal
-0.3
328
Normal
-0.4
286
Normal
-0.4
568
Normal
-0.4
415
Tumor
-0.4
262
Normal
-0.4
466
Normal
-0.4
697
Tumor
-0.4
224
Normal
-0.4
257
Tumor
-0.4
494
Normal
-0.4
332
Normal
-0.4
462
Normal
-0.4
284
Normal
-0.4
1016
Normal
-0.4
113
Tumor
-0.4
698
Normal
-0.4
484
Normal
-0.4
851
Tumor
-0.4
464
Normal
-0.4
564
Normal
-0.4
723
Tumor
-0.4
472
Normal
-0.5
232
Normal
-0.5
356
Normal
-0.5
278
Normal
-0.5
648
Normal
-0.5
1027
Tumor
-0.5
1042
Normal
-0.5
914
Normal
-0.5
365
Tumor
-0.5
1026
Normal
-0.5
212
Normal
-0.5
272
Normal
-0.5
446
Normal
-0.5
868
Normal
-0.5
452
Normal
-0.5
567
Tumor
-0.5
922
Normal
-0.5
482
Normal
-0.5
142
Normal
-0.5
114
Normal
-0.5
258
Normal
-0.6
298
Normal
-0.6
436
Normal
-0.6
926
Normal
-0.6
375
Tumor
-0.6
132
Normal
-0.6
368
Normal
-0.7
448
Normal
-0.7
432
Normal
-0.7
746
Normal
-0.7
474
Normal
-0.7
535
Tumor
-0.7
1043
Tumor
-0.8
1044
Normal
-0.8
111
Normal
-0.8
536
Normal
-0.8
367
Tumor
-0.8
314
Normal
-0.9
128
Normal
-1.0
1046
Normal
-1.1
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
952
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
