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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTC36 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
280.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
254.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
238.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
214.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
182.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
163.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
155.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
153.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
142.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
140.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
139.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
132.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
130.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
127.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
126.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
123.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
118.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
113.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
113.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
112.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
112.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
109.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
108.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
107.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
103.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
100.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
92.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
91.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
91.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
88.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
85.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
84.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
84.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
84.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
83.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
81.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
80.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
72.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
71.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
71.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
69.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
69.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
67.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
66.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
64.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
63.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
62.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
62.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
59.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
58.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
58.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
57.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
57.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
57.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
54.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
53.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
51.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
51.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
50.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
48.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
48.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
46.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
46.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
45.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
45.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
45.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
44.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
43.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
41.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
39.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
38.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
37.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
34.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTC36 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.8
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
489.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
291.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
284.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
257.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
209.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
143.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
122.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
110.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
106.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
101.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
100.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
98.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
95.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
95.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
94.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
90.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
85.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
84.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
79.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
78.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
76.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
75.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
62.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
59.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
56.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
56.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
50.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
48.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
47.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
44.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
41.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
41.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
41.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
41.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
40.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
38.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
36.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
36.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
34.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
436
Normal
1.3
128
Normal
1.3
714
Normal
1.3
342
Normal
1.2
162
Normal
1.2
648
Normal
1.2
698
Normal
1.2
482
Normal
1.2
298
Normal
1.2
824
Normal
1.2
278
Normal
1.2
786
Normal
1.2
114
Normal
1.1
396
Normal
1.1
882
Normal
1.1
564
Normal
1.1
366
Normal
1.1
172
Normal
1.1
222
Normal
1.1
464
Normal
1.1
862
Normal
1.1
742
Normal
1.1
534
Normal
1.1
513
Tumor
1.1
546
Normal
1.1
723
Tumor
1.1
394
Normal
1.0
912
Normal
1.0
944
Normal
1.0
426
Normal
1.0
518
Normal
1.0
858
Normal
1.0
746
Normal
1.0
196
Normal
1.0
722
Normal
1.0
314
Normal
1.0
616
Normal
1.0
1046
Normal
1.0
878
Normal
1.0
148
Normal
1.0
132
Normal
1.0
456
Normal
1.0
1022
Normal
1.0
756
Normal
1.0
388
Normal
1.0
472
Normal
1.0
568
Normal
0.9
642
Normal
0.9
554
Normal
0.9
432
Normal
0.9
514
Normal
0.9
728
Normal
0.9
738
Normal
0.9
618
Normal
0.9
422
Normal
0.9
452
Normal
0.9
111
Normal
0.9
864
Normal
0.9
356
Normal
0.9
462
Normal
0.9
664
Normal
0.9
914
Normal
0.9
696
Normal
0.9
376
Normal
0.9
816
Normal
0.9
424
Normal
0.9
628
Normal
0.9
186
Normal
0.9
481
Tumor
0.8
1032
Normal
0.8
1026
Normal
0.8
258
Normal
0.8
484
Normal
0.8
488
Normal
0.8
228
Normal
0.8
466
Normal
0.8
574
Normal
0.8
286
Normal
0.8
981
Tumor
0.8
922
Normal
0.8
232
Normal
0.8
572
Normal
0.8
332
Normal
0.8
414
Normal
0.8
446
Normal
0.8
214
Normal
0.8
412
Normal
0.8
976
Normal
0.8
866
Normal
0.8
744
Normal
0.7
428
Normal
0.7
938
Normal
0.7
636
Normal
0.7
528
Normal
0.7
666
Normal
0.7
526
Normal
0.7
358
Normal
0.7
138
Normal
0.7
142
Normal
0.7
312
Normal
0.7
686
Normal
0.7
874
Normal
0.7
924
Normal
0.7
416
Normal
0.7
368
Normal
0.7
964
Normal
0.7
354
Normal
0.7
1014
Normal
0.7
212
Normal
0.6
952
Normal
0.6
1042
Normal
0.6
136
Normal
0.6
448
Normal
0.6
926
Normal
0.6
392
Normal
0.6
386
Normal
0.6
364
Normal
0.6
474
Normal
0.6
716
Normal
0.6
1044
Normal
0.6
818
Normal
0.6
272
Normal
0.6
884
Normal
0.6
956
Normal
0.6
352
Normal
0.6
328
Normal
0.6
662
Normal
0.6
558
Normal
0.5
1016
Normal
0.5
868
Normal
0.5
362
Normal
0.5
465
Tumor
0.5
1028
Normal
0.5
516
Normal
0.5
494
Normal
0.5
958
Normal
0.5
468
Normal
0.5
968
Normal
0.5
627
Tumor
0.4
262
Normal
0.4
124
Normal
0.4
146
Normal
0.4
778
Normal
0.4
434
Normal
0.4
126
Normal
0.4
918
Normal
0.3
218
Normal
0.3
982
Normal
0.3
955
Tumor
0.3
984
Normal
0.3
344
Normal
0.3
954
Normal
0.2
284
Normal
0.2
224
Normal
0.2
915
Tumor
0.2
966
Normal
0.2
365
Tumor
0.2
268
Normal
0.2
852
Normal
0.2
384
Normal
0.1
672
Normal
0.1
188
Normal
0.1
916
Normal
0.1
978
Normal
0.1
444
Normal
0.1
538
Normal
0.1
615
Tumor
0.0
478
Normal
0.0
423
Tumor
-0.1
741
Tumor
-0.1
524
Normal
-0.1
192
Normal
-0.1
492
Normal
-0.1
498
Normal
-0.2
261
Tumor
-0.2
327
Tumor
-0.2
1045
Tumor
-0.3
536
Normal
-0.3
217
Tumor
-0.4
515
Tumor
-0.4
867
Tumor
-0.4
911
Tumor
-0.4
145
Tumor
-0.6
415
Tumor
-0.6
873
Tumor
-0.6
451
Tumor
-0.6
785
Tumor
-0.7
823
Tumor
-0.7
1041
Tumor
-0.7
141
Tumor
-0.7
913
Tumor
-0.8
857
Tumor
-0.8
137
Tumor
-0.8
755
Tumor
-0.8
267
Tumor
-0.8
112
Tumor
-0.8
563
Tumor
-0.9
721
Tumor
-0.9
113
Tumor
-0.9
421
Tumor
-0.9
863
Tumor
-1.0
943
Tumor
-1.0
814
Normal
-1.0
447
Tumor
-1.0
433
Tumor
-1.0
461
Tumor
-1.0
977
Tumor
-1.1
1043
Tumor
-1.1
917
Tumor
-1.1
861
Tumor
-1.1
353
Tumor
-1.1
195
Tumor
-1.1
1015
Tumor
-1.1
491
Tumor
-1.1
925
Tumor
-1.2
127
Tumor
-1.2
571
Tumor
-1.2
671
Tumor
-1.3
663
Tumor
-1.3
187
Tumor
-1.3
1025
Tumor
-1.3
881
Tumor
-1.3
573
Tumor
-1.3
361
Tumor
-1.3
231
Tumor
-1.3
967
Tumor
-1.3
487
Tumor
-1.3
921
Tumor
-1.3
185
Tumor
-1.4
517
Tumor
-1.4
567
Tumor
-1.4
983
Tumor
-1.4
815
Tumor
-1.4
191
Tumor
-1.4
391
Tumor
-1.4
271
Tumor
-1.4
745
Tumor
-1.4
135
Tumor
-1.4
413
Tumor
-1.4
695
Tumor
-1.4
213
Tumor
-1.4
665
Tumor
-1.4
463
Tumor
-1.4
131
Tumor
-1.4
975
Tumor
-1.4
525
Tumor
-1.5
923
Tumor
-1.5
427
Tumor
-1.5
523
Tumor
-1.5
557
Tumor
-1.5
467
Tumor
-1.5
1027
Tumor
-1.5
125
Tumor
-1.5
411
Tumor
-1.5
431
Tumor
-1.5
383
Tumor
-1.5
257
Tumor
-1.5
477
Tumor
-1.5
285
Tumor
-1.5
777
Tumor
-1.5
363
Tumor
-1.5
963
Tumor
-1.5
425
Tumor
-1.5
227
Tumor
-1.5
697
Tumor
-1.5
877
Tumor
-1.6
161
Tumor
-1.6
297
Tumor
-1.6
221
Tumor
-1.6
445
Tumor
-1.6
813
Tumor
-1.6
1013
Tumor
-1.6
277
Tumor
-1.6
355
Tumor
-1.6
393
Tumor
-1.6
367
Tumor
-1.6
343
Tumor
-1.6
953
Tumor
-1.6
455
Tumor
-1.6
123
Tumor
-1.6
535
Tumor
-1.6
937
Tumor
-1.7
883
Tumor
-1.7
473
Tumor
-1.7
865
Tumor
-1.7
957
Tumor
-1.7
341
Tumor
-1.7
483
Tumor
-1.7
375
Tumor
-1.7
435
Tumor
-1.8
724
Normal
-1.8
331
Tumor
-1.8
1021
Tumor
-1.8
647
Tumor
-1.8
713
Tumor
-1.8
351
Tumor
-1.8
817
Tumor
-1.8
171
Tumor
-1.8
311
Tumor
-1.8
223
Tumor
-1.8
617
Tumor
-1.8
965
Tumor
-1.8
715
Tumor
-1.8
527
Tumor
-1.8
951
Tumor
-1.8
1031
Tumor
-1.8
553
Tumor
-1.9
493
Tumor
-1.9
727
Tumor
-1.9
387
Tumor
-1.9
395
Tumor
-1.9
661
Tumor
-2.0
851
Tumor
-2.0
685
Tumor
-2.0
737
Tumor
-2.0
283
Tumor
-2.0
147
Tumor
-2.0
385
Tumor
-2.0
497
Tumor
-2.0
545
Tumor
-2.1
211
Tumor
-2.1
357
Tumor
-2.1
635
Tumor
-2.1
313
Tumor
-2.1
471
Tumor
-2.2
443
Tumor
-2.2
641
Tumor
-2.2
743
Tumor
-2.2
537
Tumor
-2.3
533
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
