MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.1 nTPM
HPA Brain:31.2 nTPM
GTEx:4.1 nTPM
FANTOM5:23.8 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:2.8 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0200400600800nCPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.5
2666 Male, age 74, left hemisphere 24.0
2828 Female, age 72, unknown 21.2
2586 Male, age 75, left hemisphere 18.1
1827 Male, age 72, unknown 17.8
2019 Male, age 18, unknown 13.2
1870 Female, age 42, unknown 12.7
2219 Male, age 76, both hemispheres 12.6
1830 Male, age 51, unknown 12.0
2411 Female, age 72, unknown 11.8
1833 Male, age 53, unknown 11.2
Dorsal raphe nucleus
nTPM: 19.9
2298 Female, age 72, unknown 27.6
2016 Female, age 72, unknown 24.4
1828 Male, age 53, unknown 18.1
2047 Male, age 72, unknown 17.3
2750 Male, age 76, both hemispheres 12.1
Inferior colliculus
nTPM: 12.3
2849 Male, age 72, unknown 13.8
2097 Female, age 72, unknown 13.4
1890 Male, age 53, unknown 12.8
1848 Female, age 42, unknown 9.4
Median raphe nucleus
nTPM: 17.2
2220 Male, age 76, midline 17.2
Periaquaductal grey, anterior
nTPM: 25.9
1795 Male, age 51, unknown 31.6
1947 Male, age 18, unknown 24.9
2502 Female, age 75, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 23.6
1831 Male, age 72, unknown 27.6
2850 Male, age 76, both hemispheres 27.1
1840 Male, age 53, unknown 23.8
2464 Female, age 72, unknown 15.8
Periaquaductal grey, lateral
nTPM: 31.2
2272 Male, age 74, both hemispheres 37.8
2053 Male, age 18, unknown 31.7
2140 Male, age 76, both hemispheres 24.0
Pretectal area
nTPM: 23.9
2273 Male, age 74, both hemispheres 39.2
2407 Male, age 75, both hemispheres 36.2
2667 Female, age 75, unknown 25.2
1816 Male, age 51, unknown 25.1
1815 Male, age 53, unknown 23.7
1944 Female, age 72, unknown 22.8
2224 Female, age 72, unknown 22.4
2825 Male, age 18, unknown 19.6
2007 Male, age 72, unknown 18.1
1817 Female, age 42, unknown 15.9
2316 Male, age 76, right hemisphere 14.4
Red nucleus
nTPM: 14.5
1821 Female, age 72, unknown 20.6
2584 Male, age 75, left hemisphere 18.7
1865 Male, age 51, unknown 17.0
2725 Female, age 75, unknown 15.7
2227 Male, age 72, unknown 14.3
2769 Male, age 72, unknown 14.2
1954 Female, age 42, unknown 13.9
2785 Male, age 18, unknown 13.8
2588 Male, age 74, left hemisphere 12.4
2503 Female, age 72, unknown 12.2
1904 Male, age 53, unknown 11.3
2823 Male, age 76, right hemisphere 10.0
Substantia nigra
nTPM: 18.8
2583 Male, age 75, right hemisphere 27.1
2665 Male, age 74, both hemispheres 24.2
2590 Female, age 75, unknown 21.5
1941 Male, age 53, unknown 21.4
2699 Male, age 18, unknown 20.2
1851 Male, age 51, unknown 17.1
1889 Female, age 72, unknown 15.9
1916 Female, age 42, unknown 14.5
2241 Male, age 72, unknown 13.5
2409 Female, age 72, unknown 12.3
Superior colliculus
nTPM: 21.2
2664 Male, age 75, both hemispheres 32.5
2587 Male, age 74, left hemisphere 25.9
2261 Male, age 18, unknown 24.7
1995 Male, age 72, unknown 23.6
2087 Female, age 72, unknown 23.6
1796 Male, age 53, unknown 21.7
1913 Female, age 42, unknown 21.3
2668 Female, age 75, unknown 17.0
1839 Male, age 51, unknown 13.3
1895 Male, age 76, right hemisphere 8.7
Ventral tegmental area
nTPM: 18.9
2021 Male, age 53, unknown 23.0
1942 Male, age 51, unknown 22.8
2218 Male, age 76, both hemispheres 19.3
1915 Female, age 42, unknown 18.9
2223 Female, age 72, unknown 15.5
2410 Female, age 72, unknown 13.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.1
GTEx sample id Sample description nTPM
2.53.24.11.36.20510152025303540455055
Brain - Substantia nigra
Average nTPM: 4.1
Samples: 183

Max nTPM: 57.6
Min nTPM: 1.3
Std nTPM: 5.7
Median nTPM: 3.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 57.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 56.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 9.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 8.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 7.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 7.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 7.7
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 7.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 7.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 7.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 6.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 23.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.8
FF:10158-103A5 76 years, female 23.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.2
Pig sample Sample description nTPM
9.712.118.18.330.5024681012141618202224262830
 		Substantia nigra
nTPM: 15.7
Samples: 4

Max nTPM: 30.5
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 30.5
Sample C Male 10.1
Sample D Male 14.0
7.78.414.47.49.0024681012141618202224262830
 		Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 30.6
Min nTPM: 7.4
Sample A Female 7.8
Sample B Female 7.4
Sample C Male 30.6
Sample D Male 9.0
8.48.59.08.39.50123456789
 		Periaqueductal gray
nTPM: 8.8
Samples: 3

Max nTPM: 9.5
Min nTPM: 8.3
Sample B Female 8.5
Sample C Male 8.3
Sample D Male 9.5
13.416.620.49.326.202468101214161820222426
 		Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 26.2
Min nTPM: 9.3
Sample A Female 9.3
Sample B Female 18.5
Sample C Male 26.2
Sample D Male 14.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.8
Mouse sample Sample description nTPM
2.62.93.12.13.30.00.51.01.52.02.53.0
 		Midbrain
nTPM: 2.8
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.1
Sample A Male 3.3
Sample B Male 2.1
Sample C Female 3.1
Sample D Female 2.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
74357737 Antisense, RP_051219_04_A01, Mouse strain C57BL/6J (56 days, male) 0.6
75144656 Antisense, RP_051219_04_A01, Mouse strain C57BL/6J (56 days, male) 0.2

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