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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GNB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
122.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
441.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
391.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
390.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
369.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
355.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
334.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
331.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
320.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
314.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
310.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
268.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
251.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
246.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
245.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
242.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
235.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
230.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
226.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
225.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
218.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
217.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
216.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
215.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
215.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
213.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
212.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
210.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
203.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
199.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
199.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
196.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
196.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
195.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
195.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
193.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
192.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
191.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
185.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
185.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
184.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
183.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
182.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
182.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
182.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
181.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
181.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
180.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
179.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
178.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
176.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
174.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
174.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
171.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
170.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
168.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
167.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
165.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
165.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
165.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
165.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
165.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
163.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
163.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
162.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
162.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
162.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
162.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
162.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
161.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
161.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
160.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
160.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
158.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
157.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
157.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
156.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
154.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
154.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
153.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
153.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
153.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
151.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
150.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
150.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
150.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
149.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
148.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
148.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
148.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
147.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
146.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
146.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
146.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
144.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
144.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
143.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
143.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
142.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
141.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
140.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
140.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
140.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
139.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
139.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
138.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
138.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
138.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
136.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
136.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
135.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
135.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
134.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
134.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
134.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
133.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
133.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
132.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
132.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
132.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
130.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
130.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
130.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
130.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
130.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
129.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
128.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
127.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
127.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
127.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
126.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
126.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
126.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
126.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
125.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
125.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
125.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
124.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
124.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
124.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
124.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
123.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
122.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
122.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
122.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
122.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
122.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
121.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
120.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
120.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
120.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
120.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
119.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
119.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
119.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
118.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
118.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
118.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
117.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
116.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
115.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
115.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
115.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
115.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
114.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
113.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
113.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
113.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
113.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
113.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
112.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
112.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
112.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
111.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
111.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
110.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
110.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
109.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
109.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
109.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
108.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
107.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
107.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
106.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
106.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
106.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
105.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
105.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
105.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
105.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
105.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
104.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
104.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
104.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
104.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
102.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
102.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
102.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
102.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
102.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
102.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
101.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
101.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
101.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
101.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
101.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
101.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
100.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
99.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
98.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
98.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
98.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
97.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
97.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
97.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
97.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
97.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
97.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
97.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
96.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
96.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
96.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
96.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
95.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
95.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
95.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
95.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
95.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
95.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
95.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
95.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
94.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
94.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
94.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
94.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
94.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
94.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
93.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
93.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
93.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
93.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
93.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
92.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
92.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
92.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
92.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
92.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
92.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
91.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
91.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
91.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
90.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
90.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
90.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
90.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
90.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
89.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
89.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
89.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
89.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
89.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
89.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
88.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
88.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
88.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
88.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
88.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
87.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
87.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
87.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
86.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
85.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
85.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
85.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
84.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
84.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
84.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
84.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
83.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
83.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
83.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
83.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
82.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
82.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
82.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
81.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
81.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
81.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
81.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
80.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
80.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
79.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
78.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
77.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
77.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
77.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
77.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
77.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
77.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
76.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
76.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
76.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
75.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
75.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
74.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
74.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
73.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
73.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
73.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
73.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
72.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
72.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
71.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
71.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
71.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
71.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
71.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
69.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
68.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
68.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
68.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
67.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
67.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
67.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
66.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
65.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
65.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
65.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
64.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
64.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
63.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
63.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
63.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
63.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
63.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
62.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
62.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
62.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
62.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
62.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
61.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
61.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
61.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
61.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
58.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
55.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
54.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
52.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
51.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
50.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
50.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
49.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
47.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
46.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
42.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
41.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
41.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
38.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
38.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
36.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
33.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GNB2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
83.3
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
750.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
289.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
238.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
211.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
210.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
201.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
174.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
168.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
166.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
163.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
161.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
158.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
156.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
150.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
148.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
147.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
146.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
145.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
140.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
137.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
137.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
135.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
133.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
130.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
130.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
128.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
127.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
127.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
126.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
126.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
125.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
123.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
123.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
122.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
122.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
121.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
119.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
117.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
115.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
115.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
112.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
110.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
110.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
109.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
107.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
106.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
106.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
106.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
105.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
105.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
105.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
101.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
101.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
99.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
99.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
99.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
99.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
98.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
95.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
93.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
93.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
92.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
92.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
92.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
92.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
91.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
89.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
89.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
89.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
89.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
89.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
87.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
87.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
85.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
85.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
85.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
84.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
84.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
84.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
84.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
84.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
83.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
82.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
82.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
82.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
82.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
81.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
80.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
80.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
79.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
79.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
79.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
79.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
79.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
78.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
78.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
78.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
77.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
77.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
76.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
75.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
75.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
75.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
74.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
74.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
74.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
74.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
74.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
74.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
73.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
73.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
72.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
72.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
71.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
70.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
70.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
69.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
69.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
69.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
69.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
69.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
69.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
68.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
68.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
68.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
66.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
65.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
65.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
65.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
65.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
64.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
64.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
64.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
63.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
62.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
62.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
62.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
62.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
62.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
62.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
62.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
61.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
61.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
60.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
60.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
60.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
60.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
60.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
60.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
59.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
59.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
59.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
58.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
58.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
58.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
57.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
57.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
57.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
56.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
56.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
55.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
55.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
55.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
55.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
54.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
54.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
54.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
54.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
54.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
54.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
54.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
54.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
54.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
54.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
53.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
53.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
53.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
53.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
52.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
52.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
52.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
52.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
51.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
51.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
50.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
49.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
49.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
49.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
49.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
48.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
48.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
48.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
47.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
47.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
47.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
47.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
46.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
46.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
46.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
46.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
45.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
45.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
45.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
45.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
43.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
42.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
42.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
42.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
42.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
42.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
41.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
41.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
41.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
41.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
40.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
40.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
37.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
35.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
32.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
0.5
1025
Tumor
0.4
344
Normal
0.4
952
Normal
0.3
271
Tumor
0.3
878
Normal
0.3
777
Tumor
0.3
124
Normal
0.3
746
Normal
0.3
192
Normal
0.2
368
Normal
0.2
342
Normal
0.2
452
Normal
0.2
434
Normal
0.2
186
Normal
0.2
538
Normal
0.2
261
Tumor
0.2
142
Normal
0.2
185
Tumor
0.2
111
Normal
0.2
132
Normal
0.2
737
Tumor
0.2
455
Tumor
0.2
343
Tumor
0.2
146
Normal
0.2
744
Normal
0.2
778
Normal
0.2
977
Tumor
0.2
914
Normal
0.2
131
Tumor
0.2
1028
Normal
0.2
1026
Normal
0.2
553
Tumor
0.2
162
Normal
0.2
172
Normal
0.2
823
Tumor
0.2
921
Tumor
0.2
138
Normal
0.1
816
Normal
0.1
874
Normal
0.1
126
Normal
0.1
366
Normal
0.1
223
Tumor
0.1
492
Normal
0.1
554
Normal
0.1
924
Normal
0.1
218
Normal
0.1
136
Normal
0.1
474
Normal
0.1
365
Tumor
0.1
966
Normal
0.1
114
Normal
0.1
536
Normal
0.1
851
Tumor
0.1
221
Tumor
0.1
188
Normal
0.1
214
Normal
0.1
436
Normal
0.1
545
Tumor
0.1
386
Normal
0.1
491
Tumor
0.1
738
Normal
0.1
911
Tumor
0.1
358
Normal
0.1
222
Normal
0.1
1043
Tumor
0.1
518
Normal
0.1
393
Tumor
0.1
128
Normal
0.1
392
Normal
0.1
298
Normal
0.1
448
Normal
0.1
968
Normal
0.1
915
Tumor
0.1
456
Normal
0.1
262
Normal
0.1
258
Normal
0.1
376
Normal
0.0
975
Tumor
0.0
461
Tumor
0.0
148
Normal
0.0
546
Normal
0.0
421
Tumor
0.0
412
Normal
0.0
171
Tumor
0.0
715
Tumor
0.0
881
Tumor
0.0
686
Normal
0.0
272
Normal
0.0
1031
Tumor
0.0
938
Normal
0.0
698
Normal
0.0
868
Normal
0.0
862
Normal
0.0
161
Tumor
0.0
861
Tumor
0.0
573
Tumor
0.0
147
Tumor
0.0
813
Tumor
0.0
213
Tumor
0.0
137
Tumor
0.0
268
Normal
0.0
135
Tumor
0.0
937
Tumor
0.0
483
Tumor
0.0
125
Tumor
0.0
217
Tumor
0.0
363
Tumor
0.0
465
Tumor
0.0
713
Tumor
0.0
1016
Normal
0.0
362
Normal
0.0
396
Normal
0.0
352
Normal
0.0
471
Tumor
0.0
1041
Tumor
0.0
422
Normal
0.0
967
Tumor
0.0
227
Tumor
0.0
312
Normal
0.0
728
Normal
0.0
867
Tumor
0.0
916
Normal
0.0
462
Normal
0.0
721
Tumor
0.0
662
Normal
0.0
913
Tumor
0.0
917
Tumor
0.0
196
Normal
0.0
297
Tumor
0.0
956
Normal
0.0
426
Normal
0.0
1022
Normal
0.0
141
Tumor
0.0
283
Tumor
0.0
574
Normal
0.0
523
Tumor
0.0
463
Tumor
0.0
865
Tumor
-0.1
375
Tumor
-0.1
648
Normal
-0.1
278
Normal
-0.1
695
Tumor
-0.1
443
Tumor
-0.1
516
Normal
-0.1
464
Normal
-0.1
955
Tumor
-0.1
963
Tumor
-0.1
943
Tumor
-0.1
466
Normal
-0.1
527
Tumor
-0.1
311
Tumor
-0.1
877
Tumor
-0.1
387
Tumor
-0.1
112
Tumor
-0.1
332
Normal
-0.1
327
Tumor
-0.1
472
Normal
-0.1
918
Normal
-0.1
661
Tumor
-0.1
285
Tumor
-0.1
742
Normal
-0.1
957
Tumor
-0.1
627
Tumor
-0.1
212
Normal
-0.1
866
Normal
-0.1
468
Normal
-0.1
526
Normal
-0.1
723
Tumor
-0.1
415
Tumor
-0.1
873
Tumor
-0.1
883
Tumor
-0.1
864
Normal
-0.1
716
Normal
-0.1
498
Normal
-0.1
328
Normal
-0.1
228
Normal
-0.1
484
Normal
-0.1
944
Normal
-0.1
755
Tumor
-0.1
195
Tumor
-0.1
467
Tumor
-0.1
664
Normal
-0.1
982
Normal
-0.1
1015
Tumor
-0.1
388
Normal
-0.1
394
Normal
-0.1
696
Normal
-0.1
534
Normal
-0.1
976
Normal
-0.1
1032
Normal
-0.1
642
Normal
-0.1
447
Tumor
-0.1
286
Normal
-0.1
211
Tumor
-0.1
817
Tumor
-0.1
488
Normal
-0.1
618
Normal
-0.1
497
Tumor
-0.1
383
Tumor
-0.1
231
Tumor
-0.1
145
Tumor
-0.2
446
Normal
-0.2
984
Normal
-0.2
1044
Normal
-0.2
494
Normal
-0.2
1021
Tumor
-0.2
367
Tumor
-0.2
568
Normal
-0.2
557
Tumor
-0.2
416
Normal
-0.2
478
Normal
-0.2
355
Tumor
-0.2
487
Tumor
-0.2
493
Tumor
-0.2
617
Tumor
-0.2
385
Tumor
-0.2
433
Tumor
-0.2
852
Normal
-0.2
354
Normal
-0.2
857
Tumor
-0.2
697
Tumor
-0.2
423
Tumor
-0.2
922
Normal
-0.2
353
Tumor
-0.2
785
Tumor
-0.2
428
Normal
-0.2
414
Normal
-0.2
356
Normal
-0.2
1027
Tumor
-0.2
444
Normal
-0.2
954
Normal
-0.2
451
Tumor
-0.2
525
Tumor
-0.2
528
Normal
-0.2
1014
Normal
-0.2
431
Tumor
-0.2
981
Tumor
-0.2
926
Normal
-0.2
925
Tumor
-0.2
277
Tumor
-0.2
983
Tumor
-0.2
672
Normal
-0.2
714
Normal
-0.2
395
Tumor
-0.2
882
Normal
-0.2
964
Normal
-0.2
824
Normal
-0.2
411
Tumor
-0.2
815
Tumor
-0.2
741
Tumor
-0.2
341
Tumor
-0.2
232
Normal
-0.2
515
Tumor
-0.2
432
Normal
-0.2
331
Tumor
-0.2
635
Tumor
-0.2
445
Tumor
-0.2
314
Normal
-0.2
364
Normal
-0.3
524
Normal
-0.3
743
Tumor
-0.3
284
Normal
-0.3
1045
Tumor
-0.3
535
Tumor
-0.3
722
Normal
-0.3
958
Normal
-0.3
858
Normal
-0.3
424
Normal
-0.3
257
Tumor
-0.3
615
Tumor
-0.3
477
Tumor
-0.3
427
Tumor
-0.3
666
Normal
-0.3
391
Tumor
-0.3
267
Tumor
-0.3
113
Tumor
-0.3
1042
Normal
-0.3
814
Normal
-0.3
473
Tumor
-0.3
224
Normal
-0.3
481
Tumor
-0.3
1013
Tumor
-0.3
724
Normal
-0.3
357
Tumor
-0.3
951
Tumor
-0.3
482
Normal
-0.3
647
Tumor
-0.3
384
Normal
-0.3
786
Normal
-0.3
187
Tumor
-0.3
636
Normal
-0.4
663
Tumor
-0.4
685
Tumor
-0.4
191
Tumor
-0.4
727
Tumor
-0.4
745
Tumor
-0.4
923
Tumor
-0.4
567
Tumor
-0.4
671
Tumor
-0.4
572
Normal
-0.4
313
Tumor
-0.4
571
Tumor
-0.4
863
Tumor
-0.4
413
Tumor
-0.4
965
Tumor
-0.4
127
Tumor
-0.4
563
Tumor
-0.4
756
Normal
-0.4
912
Normal
-0.4
818
Normal
-0.5
517
Tumor
-0.5
1046
Normal
-0.5
953
Tumor
-0.5
361
Tumor
-0.5
351
Tumor
-0.5
884
Normal
-0.5
513
Tumor
-0.5
665
Tumor
-0.5
628
Normal
-0.5
564
Normal
-0.5
558
Normal
-0.5
514
Normal
-0.5
537
Tumor
-0.5
978
Normal
-0.5
123
Tumor
-0.6
533
Tumor
-0.6
435
Tumor
-0.6
641
Tumor
-0.7
616
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.