We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COPRS is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
61.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
158.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
156.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
154.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
135.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
130.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
129.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
126.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
126.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
125.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
122.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
121.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
121.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
117.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
114.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
113.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
113.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
112.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
112.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
110.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
110.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
108.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
108.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
107.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
106.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
106.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
104.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
102.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
101.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
101.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
101.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
100.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
100.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
99.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
99.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
97.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
97.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
97.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
96.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
94.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
93.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
92.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
92.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
92.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
91.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
91.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
91.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
91.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
91.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
91.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
90.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
90.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
89.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
88.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
87.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
87.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
87.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
86.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
86.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
86.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
86.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
85.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
84.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
83.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
82.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
82.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
82.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
82.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
81.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
81.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
81.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
81.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
80.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
80.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
80.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
79.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
79.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
79.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
79.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
78.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
78.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
77.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
77.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
77.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
76.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
76.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
76.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
76.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
76.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
76.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
76.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
75.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
75.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
75.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
75.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
75.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
74.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
74.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
74.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
74.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
73.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
73.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
73.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
73.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
72.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
72.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
71.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
71.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
71.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
71.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
71.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
70.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
70.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
70.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
70.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
70.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
69.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
69.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
69.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
69.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
69.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
68.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
68.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
68.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
68.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
67.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
67.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
66.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
66.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
66.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
66.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
66.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
66.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
66.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
66.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
65.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
65.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
64.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
64.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
64.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
64.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
64.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
64.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
64.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
63.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
63.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
62.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
62.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
62.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
62.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
61.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
61.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
60.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
60.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
60.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
60.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
60.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
60.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
59.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
59.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
58.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
58.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
57.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
57.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
57.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
57.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
57.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
56.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
56.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
56.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
56.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
55.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
55.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
55.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
55.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
55.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
54.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
54.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
54.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
54.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
54.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
53.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
53.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
53.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
53.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
53.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
53.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
53.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
53.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
53.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
52.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
52.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
52.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
52.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
52.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
52.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
52.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
52.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
51.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
51.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
51.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
50.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
50.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
50.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
50.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
50.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
50.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
49.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
49.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
49.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
49.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
49.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
49.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
49.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
49.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
49.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
48.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
48.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
48.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
48.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
48.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
48.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
47.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
47.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
47.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
47.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
47.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
46.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
46.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
46.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
46.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
46.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
46.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
46.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
46.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
45.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
45.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
45.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
45.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
45.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
45.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
45.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
45.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
45.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
45.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
45.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
45.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
45.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
45.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
45.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
44.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
44.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
44.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
44.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
44.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
44.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
44.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
44.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
44.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
43.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
43.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
43.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
43.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
43.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
43.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
43.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
42.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
42.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
42.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
42.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
42.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
41.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
41.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
41.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
41.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
41.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
41.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
41.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
40.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
40.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
39.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
39.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
39.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
39.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
39.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
39.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
38.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
38.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
38.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
37.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
37.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
37.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
36.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
36.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
35.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
34.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
34.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
34.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
33.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
31.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
30.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
24.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
2.1
477
Tumor
1.5
533
Tumor
1.3
647
Tumor
1.2
965
Tumor
1.2
571
Tumor
1.2
465
Tumor
1.1
695
Tumor
1.1
925
Tumor
1.1
527
Tumor
1.0
313
Tumor
1.0
1013
Tumor
1.0
1027
Tumor
1.0
353
Tumor
0.9
865
Tumor
0.9
431
Tumor
0.9
627
Tumor
0.9
231
Tumor
0.9
481
Tumor
0.8
615
Tumor
0.8
355
Tumor
0.8
663
Tumor
0.8
685
Tumor
0.8
267
Tumor
0.8
357
Tumor
0.8
473
Tumor
0.8
487
Tumor
0.8
497
Tumor
0.7
161
Tumor
0.7
937
Tumor
0.7
123
Tumor
0.7
525
Tumor
0.7
573
Tumor
0.7
913
Tumor
0.7
483
Tumor
0.7
411
Tumor
0.6
361
Tumor
0.6
617
Tumor
0.6
383
Tumor
0.6
537
Tumor
0.6
861
Tumor
0.5
351
Tumor
0.5
563
Tumor
0.5
342
Normal
0.5
981
Tumor
0.5
1045
Tumor
0.5
257
Tumor
0.5
415
Tumor
0.5
171
Tumor
0.5
953
Tumor
0.5
665
Tumor
0.5
443
Tumor
0.5
354
Normal
0.5
341
Tumor
0.5
745
Tumor
0.5
1046
Normal
0.5
741
Tumor
0.5
915
Tumor
0.5
923
Tumor
0.5
755
Tumor
0.5
358
Normal
0.4
672
Normal
0.4
1016
Normal
0.4
513
Tumor
0.4
344
Normal
0.4
958
Normal
0.4
147
Tumor
0.4
363
Tumor
0.4
365
Tumor
0.4
873
Tumor
0.4
261
Tumor
0.4
951
Tumor
0.3
493
Tumor
0.3
628
Normal
0.3
187
Tumor
0.3
921
Tumor
0.3
211
Tumor
0.3
1044
Normal
0.3
698
Normal
0.3
352
Normal
0.3
864
Normal
0.3
1022
Normal
0.3
785
Tumor
0.3
924
Normal
0.3
384
Normal
0.3
1014
Normal
0.3
1032
Normal
0.3
978
Normal
0.3
132
Normal
0.3
517
Tumor
0.3
375
Tumor
0.3
567
Tumor
0.3
1021
Tumor
0.3
395
Tumor
0.3
724
Normal
0.2
445
Tumor
0.2
955
Tumor
0.2
1041
Tumor
0.2
112
Tumor
0.2
916
Normal
0.2
327
Tumor
0.2
412
Normal
0.2
311
Tumor
0.2
433
Tumor
0.2
391
Tumor
0.2
862
Normal
0.2
456
Normal
0.2
984
Normal
0.2
671
Tumor
0.2
883
Tumor
0.2
616
Normal
0.2
364
Normal
0.2
448
Normal
0.2
328
Normal
0.2
918
Normal
0.2
922
Normal
0.2
283
Tumor
0.2
468
Normal
0.2
435
Tumor
0.2
416
Normal
0.2
867
Tumor
0.2
1031
Tumor
0.2
635
Tumor
0.2
851
Tumor
0.2
944
Normal
0.2
277
Tumor
0.1
982
Normal
0.1
545
Tumor
0.1
641
Tumor
0.1
911
Tumor
0.1
1043
Tumor
0.1
125
Tumor
0.1
1042
Normal
0.1
498
Normal
0.1
721
Tumor
0.1
484
Normal
0.1
1026
Normal
0.1
478
Normal
0.1
474
Normal
0.1
738
Normal
0.1
874
Normal
0.1
564
Normal
0.1
954
Normal
0.1
648
Normal
0.1
743
Tumor
0.1
461
Tumor
0.1
466
Normal
0.1
523
Tumor
0.1
912
Normal
0.1
362
Normal
0.1
376
Normal
0.1
491
Tumor
0.1
285
Tumor
0.1
568
Normal
0.1
127
Tumor
0.1
385
Tumor
0.1
518
Normal
0.0
917
Tumor
0.0
356
Normal
0.0
938
Normal
0.0
914
Normal
0.0
714
Normal
0.0
366
Normal
0.0
142
Normal
0.0
1028
Normal
0.0
715
Tumor
0.0
926
Normal
0.0
298
Normal
0.0
463
Tumor
0.0
455
Tumor
0.0
343
Tumor
0.0
138
Normal
0.0
866
Normal
0.0
278
Normal
0.0
297
Tumor
0.0
572
Normal
0.0
878
Normal
0.0
716
Normal
0.0
146
Normal
0.0
494
Normal
0.0
852
Normal
0.0
881
Tumor
0.0
696
Normal
0.0
956
Normal
0.0
664
Normal
0.0
727
Tumor
0.0
977
Tumor
0.0
268
Normal
0.0
471
Tumor
0.0
967
Tumor
0.0
451
Tumor
0.0
145
Tumor
0.0
464
Normal
-0.1
488
Normal
-0.1
232
Normal
-0.1
975
Tumor
-0.1
535
Tumor
-0.1
312
Normal
-0.1
777
Tumor
-0.1
284
Normal
-0.1
976
Normal
-0.1
966
Normal
-0.1
857
Tumor
-0.1
574
Normal
-0.1
444
Normal
-0.1
368
Normal
-0.1
868
Normal
-0.1
557
Tumor
-0.1
943
Tumor
-0.1
516
Normal
-0.1
666
Normal
-0.1
536
Normal
-0.1
963
Tumor
-0.1
526
Normal
-0.1
386
Normal
-0.1
952
Normal
-0.1
558
Normal
-0.1
195
Tumor
-0.1
482
Normal
-0.1
884
Normal
-0.2
524
Normal
-0.2
472
Normal
-0.2
452
Normal
-0.2
722
Normal
-0.2
462
Normal
-0.2
447
Tumor
-0.2
723
Tumor
-0.2
514
Normal
-0.2
213
Tumor
-0.2
492
Normal
-0.2
742
Normal
-0.2
553
Tumor
-0.2
387
Tumor
-0.2
534
Normal
-0.2
262
Normal
-0.2
964
Normal
-0.2
528
Normal
-0.2
396
Normal
-0.2
446
Normal
-0.2
968
Normal
-0.2
224
Normal
-0.2
221
Tumor
-0.2
131
Tumor
-0.2
228
Normal
-0.2
662
Normal
-0.2
1025
Tumor
-0.2
882
Normal
-0.2
137
Tumor
-0.2
618
Normal
-0.2
554
Normal
-0.2
223
Tumor
-0.2
786
Normal
-0.3
728
Normal
-0.3
858
Normal
-0.3
546
Normal
-0.3
515
Tumor
-0.3
141
Tumor
-0.3
538
Normal
-0.3
432
Normal
-0.3
1015
Tumor
-0.3
392
Normal
-0.3
188
Normal
-0.3
286
Normal
-0.3
113
Tumor
-0.3
191
Tumor
-0.3
467
Tumor
-0.3
713
Tumor
-0.3
824
Normal
-0.3
185
Tumor
-0.3
148
Normal
-0.4
697
Tumor
-0.4
636
Normal
-0.4
642
Normal
-0.4
746
Normal
-0.4
114
Normal
-0.4
686
Normal
-0.4
222
Normal
-0.4
388
Normal
-0.4
756
Normal
-0.4
661
Tumor
-0.4
272
Normal
-0.4
737
Tumor
-0.4
436
Normal
-0.4
214
Normal
-0.4
983
Tumor
-0.4
271
Tumor
-0.4
136
Normal
-0.4
196
Normal
-0.5
744
Normal
-0.5
227
Tumor
-0.5
818
Normal
-0.5
863
Tumor
-0.5
332
Normal
-0.5
128
Normal
-0.5
212
Normal
-0.5
816
Normal
-0.5
186
Normal
-0.5
162
Normal
-0.5
172
Normal
-0.5
314
Normal
-0.5
217
Tumor
-0.5
823
Tumor
-0.6
815
Tumor
-0.6
367
Tumor
-0.6
331
Tumor
-0.6
817
Tumor
-0.6
258
Normal
-0.6
126
Normal
-0.6
778
Normal
-0.6
124
Normal
-0.6
434
Normal
-0.7
192
Normal
-0.7
814
Normal
-0.7
218
Normal
-0.7
813
Tumor
-0.8
877
Tumor
-0.8
111
Normal
-0.9
393
Tumor
-1.0
394
Normal
-1.0
135
Tumor
-1.6
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
