MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.2 nTPM
HPA Brain:99.0 nTPM
GTEx:44.2 nTPM
FANTOM5:113.6 Scaled Tags Per Million
Pig:94.8 nTPM
Mouse:50.1 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 99.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.0
2828 Female, age 72, unknown 74.6
2586 Male, age 75, left hemisphere 66.8
1870 Female, age 42, unknown 65.1
2219 Male, age 76, both hemispheres 60.6
2666 Male, age 74, left hemisphere 55.8
1833 Male, age 53, unknown 54.5
1827 Male, age 72, unknown 53.9
2411 Female, age 72, unknown 50.3
1830 Male, age 51, unknown 47.4
2019 Male, age 18, unknown 21.2
Dorsal raphe nucleus
nTPM: 96.8
2047 Male, age 72, unknown 126.0
2016 Female, age 72, unknown 107.5
2298 Female, age 72, unknown 106.5
1828 Male, age 53, unknown 76.3
2750 Male, age 76, both hemispheres 67.8
Inferior colliculus
nTPM: 63.0
1848 Female, age 42, unknown 76.7
2849 Male, age 72, unknown 70.6
2097 Female, age 72, unknown 55.4
1890 Male, age 53, unknown 49.4
Median raphe nucleus
nTPM: 84.9
2220 Male, age 76, midline 84.9
Periaquaductal grey, anterior
nTPM: 87.2
1795 Male, age 51, unknown 98.7
1947 Male, age 18, unknown 94.0
2502 Female, age 75, unknown 69.0
Periaquaductal grey, dorsal
nTPM: 99.0
1840 Male, age 53, unknown 133.9
2850 Male, age 76, both hemispheres 114.7
2464 Female, age 72, unknown 76.6
1831 Male, age 72, unknown 70.5
Periaquaductal grey, lateral
nTPM: 95.0
2140 Male, age 76, both hemispheres 97.4
2053 Male, age 18, unknown 96.3
2272 Male, age 74, both hemispheres 91.4
Pretectal area
nTPM: 67.9
2273 Male, age 74, both hemispheres 118.9
2224 Female, age 72, unknown 108.6
2825 Male, age 18, unknown 107.6
2667 Female, age 75, unknown 70.2
2316 Male, age 76, right hemisphere 57.9
1944 Female, age 72, unknown 57.1
1817 Female, age 42, unknown 52.1
1815 Male, age 53, unknown 49.6
1816 Male, age 51, unknown 46.4
2407 Male, age 75, both hemispheres 44.8
2007 Male, age 72, unknown 34.0
Red nucleus
nTPM: 45.4
2725 Female, age 75, unknown 67.3
1954 Female, age 42, unknown 54.8
2503 Female, age 72, unknown 50.9
2227 Male, age 72, unknown 50.6
2769 Male, age 72, unknown 50.4
1821 Female, age 72, unknown 46.0
1865 Male, age 51, unknown 45.9
1904 Male, age 53, unknown 44.0
2823 Male, age 76, right hemisphere 39.4
2588 Male, age 74, left hemisphere 38.1
2584 Male, age 75, left hemisphere 29.3
2785 Male, age 18, unknown 28.6
Substantia nigra
nTPM: 50.9
2699 Male, age 18, unknown 101.7
1916 Female, age 42, unknown 57.9
1851 Male, age 51, unknown 53.5
1889 Female, age 72, unknown 47.4
2583 Male, age 75, right hemisphere 46.2
2241 Male, age 72, unknown 44.6
1941 Male, age 53, unknown 43.9
2409 Female, age 72, unknown 40.0
2590 Female, age 75, unknown 38.7
2665 Male, age 74, both hemispheres 35.5
Superior colliculus
nTPM: 64.2
1995 Male, age 72, unknown 85.2
2664 Male, age 75, both hemispheres 83.1
1796 Male, age 53, unknown 65.4
1839 Male, age 51, unknown 63.2
2587 Male, age 74, left hemisphere 62.0
2261 Male, age 18, unknown 60.3
2668 Female, age 75, unknown 58.8
1913 Female, age 42, unknown 58.4
2087 Female, age 72, unknown 54.5
1895 Male, age 76, right hemisphere 51.4
Ventral tegmental area
nTPM: 61.6
2021 Male, age 53, unknown 87.5
1942 Male, age 51, unknown 69.0
1915 Female, age 42, unknown 67.0
2218 Male, age 76, both hemispheres 55.5
2223 Female, age 72, unknown 49.5
2410 Female, age 72, unknown 41.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.2
Samples: 139

Max nTPM: 154.5
Min nTPM: 5.2
Std nTPM: 23.3
Median nTPM: 41.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 154.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 152.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 113.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 93.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 87.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 84.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 83.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 78.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 78.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 76.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 75.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 113.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.6
FF:10158-103A5 76 years, female 113.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 94.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.6
Samples: 4

Max nTPM: 87.5
Min nTPM: 43.1
Sample A Female 87.5
Sample B Female 69.6
Sample C Male 43.1
Sample D Male 82.0
Midbrain
nTPM: 94.8
Samples: 4

Max nTPM: 181.0
Min nTPM: 50.0
Sample A Female 181.0
Sample B Female 50.0
Sample C Male 76.2
Sample D Male 72.0
Periaqueductal gray
nTPM: 83.2
Samples: 3

Max nTPM: 93.3
Min nTPM: 73.2
Sample B Female 73.2
Sample C Male 83.1
Sample D Male 93.3
Superior colliculi
nTPM: 58.3
Samples: 4

Max nTPM: 91.1
Min nTPM: 39.8
Sample A Female 91.1
Sample B Female 42.3
Sample C Male 39.8
Sample D Male 60.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 50.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.1
Samples: 4

Max nTPM: 53.8
Min nTPM: 46.8
Sample A Male 46.8
Sample B Male 49.2
Sample C Female 53.8
Sample D Female 50.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
73497044 Antisense, RP_051019_04_B09, Mouse strain C57BL/6J (56 days, male) 3.2
74357547 Antisense, RP_051019_04_B09, Mouse strain C57BL/6J (56 days, male) 1.4
70794013 Antisense, RP_050712_01_B10, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org