MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.9 nTPM
HPA Brain:10.6 nTPM
GTEx:0.9 nTPM
FANTOM5:9.4 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.6
1830 Male, age 51, unknown 12.1
1833 Male, age 53, unknown 11.2
2828 Female, age 72, unknown 10.9
2666 Male, age 74, left hemisphere 10.5
2019 Male, age 18, unknown 9.5
1870 Female, age 42, unknown 9.1
2219 Male, age 76, both hemispheres 8.8
2411 Female, age 72, unknown 8.4
1827 Male, age 72, unknown 8.2
2586 Male, age 75, left hemisphere 6.8
Dorsal raphe nucleus
nTPM: 10.6
2016 Female, age 72, unknown 12.2
2047 Male, age 72, unknown 11.3
1828 Male, age 53, unknown 11.1
2750 Male, age 76, both hemispheres 10.4
2298 Female, age 72, unknown 8.0
Inferior colliculus
nTPM: 9.4
1848 Female, age 42, unknown 10.2
2849 Male, age 72, unknown 9.6
1890 Male, age 53, unknown 9.5
2097 Female, age 72, unknown 8.3
Median raphe nucleus
nTPM: 9.7
2220 Male, age 76, midline 9.7
Periaquaductal grey, anterior
nTPM: 9.4
1947 Male, age 18, unknown 10.7
1795 Male, age 51, unknown 9.4
2502 Female, age 75, unknown 8.0
Periaquaductal grey, dorsal
nTPM: 10.2
2850 Male, age 76, both hemispheres 11.9
2464 Female, age 72, unknown 10.3
1831 Male, age 72, unknown 9.8
1840 Male, age 53, unknown 8.9
Periaquaductal grey, lateral
nTPM: 10.6
2053 Male, age 18, unknown 10.8
2140 Male, age 76, both hemispheres 10.7
2272 Male, age 74, both hemispheres 10.5
Pretectal area
nTPM: 9.1
2667 Female, age 75, unknown 10.8
2316 Male, age 76, right hemisphere 10.4
2825 Male, age 18, unknown 10.0
2224 Female, age 72, unknown 9.8
2273 Male, age 74, both hemispheres 9.4
2407 Male, age 75, both hemispheres 9.1
1815 Male, age 53, unknown 8.7
1944 Female, age 72, unknown 8.6
1817 Female, age 42, unknown 8.0
2007 Male, age 72, unknown 7.7
1816 Male, age 51, unknown 7.4
Red nucleus
nTPM: 10.4
2823 Male, age 76, right hemisphere 14.0
1954 Female, age 42, unknown 12.5
1904 Male, age 53, unknown 11.2
1865 Male, age 51, unknown 10.8
2503 Female, age 72, unknown 10.7
2588 Male, age 74, left hemisphere 10.6
1821 Female, age 72, unknown 10.1
2725 Female, age 75, unknown 10.1
2769 Male, age 72, unknown 9.7
2227 Male, age 72, unknown 9.5
2584 Male, age 75, left hemisphere 8.0
2785 Male, age 18, unknown 8.0
Substantia nigra
nTPM: 10.5
2241 Male, age 72, unknown 13.7
2409 Female, age 72, unknown 11.9
2699 Male, age 18, unknown 11.3
2590 Female, age 75, unknown 11.1
2583 Male, age 75, right hemisphere 11.0
2665 Male, age 74, both hemispheres 9.9
1941 Male, age 53, unknown 9.6
1851 Male, age 51, unknown 8.9
1916 Female, age 42, unknown 8.8
1889 Female, age 72, unknown 8.7
Superior colliculus
nTPM: 9.1
1913 Female, age 42, unknown 10.6
1839 Male, age 51, unknown 10.0
1995 Male, age 72, unknown 10.0
2587 Male, age 74, left hemisphere 9.7
1895 Male, age 76, right hemisphere 9.3
2087 Female, age 72, unknown 8.9
2668 Female, age 75, unknown 8.5
2261 Male, age 18, unknown 8.2
1796 Male, age 53, unknown 7.9
2664 Male, age 75, both hemispheres 7.9
Ventral tegmental area
nTPM: 9.8
2218 Male, age 76, both hemispheres 11.8
2021 Male, age 53, unknown 10.4
2223 Female, age 72, unknown 9.8
1942 Male, age 51, unknown 9.2
1915 Female, age 42, unknown 8.7
2410 Female, age 72, unknown 8.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 0.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.9
Samples: 139

Max nTPM: 2.7
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 2.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 2.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 2.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 1.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 1.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 1.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.4
FF:10158-103A5 76 years, female 9.4

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